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@neuroinformatics-unit

SWC/GCNU Neuroinformatics Unit

Neuroscience & ML Research Software Engineering Group

Neuroinformatics Unit

The Neuroinformatics Unit (NIU) is a Research Software Engineering team based at the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning. We collaborate with researchers and other software engineers to advance research in the two research centres and make new algorithms and tools available to the global community.

We also lead development of the BrainGlobe Initiative and contribute to various Sainsbury Wellcome Centre and other open-source tools.

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  1. movement movement Public

    A Python toolbox for analysing animal body movements across space and time

    Python 212 75

  2. NeuroBlueprint NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    19 4

  3. datashuttle datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 29 27

  4. python-cookiecutter python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    Python 34 5

  5. fancylog fancylog Public

    Fancier logging with python.

    Python 14 9

  6. spikewrap spikewrap Public

    A package to manage electrophysiology analysis.

    Python 23 15

Repositories

Showing 10 of 75 repositories
  • neuroinformatics-unit.github.io Public

    Home website of the Neuroinformatics Unit

    neuroinformatics-unit/neuroinformatics-unit.github.io’s past year of commit activity
    12 BSD-3-Clause 4 7 6 Updated Nov 27, 2025
  • movement Public

    A Python toolbox for analysing animal body movements across space and time

    neuroinformatics-unit/movement’s past year of commit activity
    Python 212 BSD-3-Clause 75 110 (1 issue needs help) 29 Updated Nov 27, 2025
  • ethology Public

    Mix-and-match computer vision tools for your animal behaviour analysis

    neuroinformatics-unit/ethology’s past year of commit activity
    Python 20 BSD-3-Clause 19 27 16 Updated Nov 27, 2025
  • fancylog Public

    Fancier logging with python.

    neuroinformatics-unit/fancylog’s past year of commit activity
    Python 14 BSD-3-Clause 9 11 (1 issue needs help) 1 Updated Nov 27, 2025
  • HowTo Public

    NIU website on common software problems and their troubleshooting

    neuroinformatics-unit/HowTo’s past year of commit activity
    10 CC-BY-4.0 1 13 1 Updated Nov 25, 2025
  • photon-mosaic Public

    Automated and reproducible analysis of multiphoton imaging datasets

    neuroinformatics-unit/photon-mosaic’s past year of commit activity
    Python 11 GPL-3.0 2 22 (1 issue needs help) 6 Updated Nov 25, 2025
  • dashboard Public Forked from github-community-projects/org-metrics-dashboard

    Overview of all Neuroinformatics Unit repos

    neuroinformatics-unit/dashboard’s past year of commit activity
    TypeScript 2 MIT 36 1 8 Updated Nov 24, 2025
  • spikewrap Public

    A package to manage electrophysiology analysis.

    neuroinformatics-unit/spikewrap’s past year of commit activity
    Python 23 BSD-3-Clause 15 21 5 Updated Nov 24, 2025
  • slides-movement-cbias2025 Public

    Slides about `movement`, presented at CBIAS 2025

    neuroinformatics-unit/slides-movement-cbias2025’s past year of commit activity
    TeX 0 CC-BY-4.0 0 0 0 Updated Nov 23, 2025
  • actions Public

    Re-usable GitHub Action scripts

    neuroinformatics-unit/actions’s past year of commit activity
    13 MIT 4 8 1 Updated Nov 21, 2025