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fix(nf-tower): ensure final log checkpoint runs after thread interrupt#7097

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fix(nf-tower): ensure final log checkpoint runs after thread interrupt#7097
rnaidu-seqera wants to merge 2 commits into
nextflow-io:masterfrom
rnaidu-seqera:fix/logs-checkpoint-interrupt

test(nf-tower): verify interrupt flag is clear when saveFiles is called

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