Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Nf test local subworkflows #224

Open
wants to merge 27 commits into
base: nf-test-local-modules
Choose a base branch
from
Open

Nf test local subworkflows #224

wants to merge 27 commits into from

Commits on Nov 14, 2024

  1. move subwf tests to the subwf folder

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    b0236dd View commit details
    Browse the repository at this point in the history

  2. add restrictions on sample and family name

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    ddb39a2 View commit details
    Browse the repository at this point in the history

  3. Merge branch 'nf-test-local-modules' into nf-test-local-subworkflows

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    2830175 View commit details
    Browse the repository at this point in the history

  4. test vcf_concat_bcftools

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    9d4db4f View commit details
    Browse the repository at this point in the history

  5. test vcf_filter_bcftools

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    5d1f117 View commit details
    Browse the repository at this point in the history

  6. add a test coverage ci comment

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    37f15b5 View commit details
    Browse the repository at this point in the history

  7. pre-commit

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    d24dc42 View commit details
    Browse the repository at this point in the history

  8. print out the coverage in the ci logs

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    883a606 View commit details
    Browse the repository at this point in the history

  9. fix missing $ in coverage action

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    53a3f76 View commit details
    Browse the repository at this point in the history

  10. update shell

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    de81099 View commit details
    Browse the repository at this point in the history

  11. try another method

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    df481a3 View commit details
    Browse the repository at this point in the history

  12. use env instead

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    81ae13b View commit details
    Browse the repository at this point in the history

  13. use another env method

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    8a62fad View commit details
    Browse the repository at this point in the history

  14. use another env method

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    816d411 View commit details
    Browse the repository at this point in the history

  15. try even more methods

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    1feca5f View commit details
    Browse the repository at this point in the history

  16. convert points to -

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    c8c0fa3 View commit details
    Browse the repository at this point in the history

  17. fix wrongly place quote

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    4b495e3 View commit details
    Browse the repository at this point in the history

  18. retrigger ci tests

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    94af572 View commit details
    Browse the repository at this point in the history

  19. forget coverage

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    fd97047 View commit details
    Browse the repository at this point in the history

  20. add triggers for full test runs

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    6611a85 View commit details
    Browse the repository at this point in the history

  21. run all tests on PRs to main

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    344f240 View commit details
    Browse the repository at this point in the history

  22. fix if statement

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    382e015 View commit details
    Browse the repository at this point in the history

  23. fix test vcf_ped_rtgtools + fix ci

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    8c50b03 View commit details
    Browse the repository at this point in the history

  24. fix cram prepare subwf tests

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    62a054b View commit details
    Browse the repository at this point in the history

  25. fix more workflow tests

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    300ee2b View commit details
    Browse the repository at this point in the history

  26. set test dir to root of repo

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    b8fbdce View commit details
    Browse the repository at this point in the history

  27. don't do disk space cleanup anymore

    @nvnieuwk
    nvnieuwk committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    93e956f View commit details
    Browse the repository at this point in the history