Release 2.12.0 #794

d4straub · 2024-11-13T08:16:42Z

Release 2.12.0

Before being ready for review:

~~Fails unexpected in nf-core linting / nf-core (pull_request) with included_configs: Pipeline config does not include custom configs. Please uncomment the includeConfig line.~~ done
~~AWS full size test manual trigger~~ done
~~manually triggered AWS full size test succeeded~~ done
~~Version update from 2.12.0dev to 2.12.0~~ done
~~Potentially address phred score mis-detection by dada2 #773 by adding a new parameter~~ postponed

When achieved 2 reviewer approvals, before merging, check if AWS full size test automatically triggered!

PR checklist

Bump version 2.12.0dev

…4straub/ampliseq into merging-template-updates_3.0.2

…tdb.ecogenomic.org

merging template updates v3.0.2

fix --dada_ref_taxonomy silva=132

Remove white space in process tags

Update Picrust2 and nf-core modules

github-actions · 2024-11-13T08:19:38Z

`nf-core pipelines lint` overall result: Passed ✅ ⚠️

Posted for pipeline commit ca63a52

+| ✅ 298 tests passed       |+
#| ❔   6 tests were ignored |#
!| ❗   4 tests had warnings |!

❗ Test warnings:

readme - README did not have a Nextflow minimum version badge.
pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!

❔ Tests ignored:

files_exist - File is ignored: conf/igenomes.config
nextflow_config - Config default ignored: params.report_template
nextflow_config - Config default ignored: params.report_css
nextflow_config - Config default ignored: params.report_logo
files_unchanged - File ignored due to lint config: .gitattributes
actions_ci - actions_ci

✅ Tests passed:

files_exist - File found: .gitattributes
files_exist - File found: .gitignore
files_exist - File found: .nf-core.yml
files_exist - File found: .editorconfig
files_exist - File found: .prettierignore
files_exist - File found: .prettierrc.yml
files_exist - File found: CHANGELOG.md
files_exist - File found: CITATIONS.md
files_exist - File found: CODE_OF_CONDUCT.md
files_exist - File found: LICENSE or LICENSE.md or LICENCE or LICENCE.md
files_exist - File found: nextflow_schema.json
files_exist - File found: nextflow.config
files_exist - File found: README.md
files_exist - File found: .github/.dockstore.yml
files_exist - File found: .github/CONTRIBUTING.md
files_exist - File found: .github/ISSUE_TEMPLATE/bug_report.yml
files_exist - File found: .github/ISSUE_TEMPLATE/config.yml
files_exist - File found: .github/ISSUE_TEMPLATE/feature_request.yml
files_exist - File found: .github/PULL_REQUEST_TEMPLATE.md
files_exist - File found: .github/workflows/branch.yml
files_exist - File found: .github/workflows/ci.yml
files_exist - File found: .github/workflows/linting_comment.yml
files_exist - File found: .github/workflows/linting.yml
files_exist - File found: assets/email_template.html
files_exist - File found: assets/email_template.txt
files_exist - File found: assets/sendmail_template.txt
files_exist - File found: assets/nf-core-ampliseq_logo_light.png
files_exist - File found: conf/modules.config
files_exist - File found: conf/test.config
files_exist - File found: conf/test_full.config
files_exist - File found: docs/images/nf-core-ampliseq_logo_light.png
files_exist - File found: docs/images/nf-core-ampliseq_logo_dark.png
files_exist - File found: docs/output.md
files_exist - File found: docs/README.md
files_exist - File found: docs/README.md
files_exist - File found: docs/usage.md
files_exist - File found: main.nf
files_exist - File found: assets/multiqc_config.yml
files_exist - File found: conf/base.config
files_exist - File found: conf/igenomes_ignored.config
files_exist - File found: .github/workflows/awstest.yml
files_exist - File found: .github/workflows/awsfulltest.yml
files_exist - File found: modules.json
files_exist - File not found check: .github/ISSUE_TEMPLATE/bug_report.md
files_exist - File not found check: .github/ISSUE_TEMPLATE/feature_request.md
files_exist - File not found check: .github/workflows/push_dockerhub.yml
files_exist - File not found check: .markdownlint.yml
files_exist - File not found check: .nf-core.yaml
files_exist - File not found check: .yamllint.yml
files_exist - File not found check: bin/markdown_to_html.r
files_exist - File not found check: conf/aws.config
files_exist - File not found check: docs/images/nf-core-ampliseq_logo.png
files_exist - File not found check: lib/Checks.groovy
files_exist - File not found check: lib/Completion.groovy
files_exist - File not found check: lib/NfcoreTemplate.groovy
files_exist - File not found check: lib/Utils.groovy
files_exist - File not found check: lib/Workflow.groovy
files_exist - File not found check: lib/WorkflowMain.groovy
files_exist - File not found check: lib/WorkflowAmpliseq.groovy
files_exist - File not found check: parameters.settings.json
files_exist - File not found check: pipeline_template.yml
files_exist - File not found check: Singularity
files_exist - File not found check: lib/nfcore_external_java_deps.jar
files_exist - File not found check: .travis.yml
nextflow_config - Found nf-schema plugin
nextflow_config - Config variable found: manifest.name
nextflow_config - Config variable found: manifest.nextflowVersion
nextflow_config - Config variable found: manifest.description
nextflow_config - Config variable found: manifest.version
nextflow_config - Config variable found: manifest.homePage
nextflow_config - Config variable found: timeline.enabled
nextflow_config - Config variable found: trace.enabled
nextflow_config - Config variable found: report.enabled
nextflow_config - Config variable found: dag.enabled
nextflow_config - Config variable found: process.cpus
nextflow_config - Config variable found: process.memory
nextflow_config - Config variable found: process.time
nextflow_config - Config variable found: params.outdir
nextflow_config - Config variable found: params.input
nextflow_config - Config variable found: validation.help.enabled
nextflow_config - Config variable found: manifest.mainScript
nextflow_config - Config variable found: timeline.file
nextflow_config - Config variable found: trace.file
nextflow_config - Config variable found: report.file
nextflow_config - Config variable found: dag.file
nextflow_config - Config variable found: validation.help.beforeText
nextflow_config - Config variable found: validation.help.afterText
nextflow_config - Config variable found: validation.help.command
nextflow_config - Config variable found: validation.summary.beforeText
nextflow_config - Config variable found: validation.summary.afterText
nextflow_config - Config variable (correctly) not found: params.nf_required_version
nextflow_config - Config variable (correctly) not found: params.container
nextflow_config - Config variable (correctly) not found: params.singleEnd
nextflow_config - Config variable (correctly) not found: params.igenomesIgnore
nextflow_config - Config variable (correctly) not found: params.name
nextflow_config - Config variable (correctly) not found: params.enable_conda
nextflow_config - Config variable (correctly) not found: params.max_cpus
nextflow_config - Config variable (correctly) not found: params.max_memory
nextflow_config - Config variable (correctly) not found: params.max_time
nextflow_config - Config variable (correctly) not found: params.validationFailUnrecognisedParams
nextflow_config - Config variable (correctly) not found: params.validationLenientMode
nextflow_config - Config variable (correctly) not found: params.validationSchemaIgnoreParams
nextflow_config - Config variable (correctly) not found: params.validationShowHiddenParams
nextflow_config - Config timeline.enabled had correct value: true
nextflow_config - Config report.enabled had correct value: true
nextflow_config - Config trace.enabled had correct value: true
nextflow_config - Config dag.enabled had correct value: true
nextflow_config - Config manifest.name began with nf-core/
nextflow_config - Config variable manifest.homePage began with https://github.com/nf-core/
nextflow_config - Config dag.file ended with .html
nextflow_config - Config variable manifest.nextflowVersion started with >= or !>=
nextflow_config - Config manifest.version does not contain dev for release: 2.12.0
nextflow_config - Config params.custom_config_version is set to master
nextflow_config - Config params.custom_config_base is set to https://raw.githubusercontent.com/nf-core/configs/master
nextflow_config - Lines for loading custom profiles found
nextflow_config - nextflow.config contains configuration profile test
nextflow_config - Config default value correct: params.extension= /*_R{1,2}_001.fastq.gz
nextflow_config - Config default value correct: params.min_read_counts= 1
nextflow_config - Config default value correct: params.cutadapt_min_overlap= 3
nextflow_config - Config default value correct: params.cutadapt_max_error_rate= 0.1
nextflow_config - Config default value correct: params.trunc_qmin= 25
nextflow_config - Config default value correct: params.trunc_rmin= 0.75
nextflow_config - Config default value correct: params.max_ee= 2
nextflow_config - Config default value correct: params.min_len= 50
nextflow_config - Config default value correct: params.sample_inference= independent
nextflow_config - Config default value correct: params.vsearch_cluster_id= 0.97
nextflow_config - Config default value correct: params.orf_start= 1
nextflow_config - Config default value correct: params.stop_codons= TAA,TAG
nextflow_config - Config default value correct: params.dada_ref_taxonomy= silva=138
nextflow_config - Config default value correct: params.pplace_alnmethod= hmmer
nextflow_config - Config default value correct: params.kraken2_confidence= 0.0
nextflow_config - Config default value correct: params.cut_its= none
nextflow_config - Config default value correct: params.its_partial= 0
nextflow_config - Config default value correct: params.exclude_taxa= mitochondria,chloroplast
nextflow_config - Config default value correct: params.min_frequency= 1
nextflow_config - Config default value correct: params.min_samples= 1
nextflow_config - Config default value correct: params.diversity_rarefaction_depth= 500
nextflow_config - Config default value correct: params.tax_agglom_min= 2
nextflow_config - Config default value correct: params.tax_agglom_max= 6
nextflow_config - Config default value correct: params.ancom_sample_min_count= 1
nextflow_config - Config default value correct: params.ancombc_effect_size= 1.0
nextflow_config - Config default value correct: params.ancombc_significance= 0.05
nextflow_config - Config default value correct: params.report_title= Summary of analysis results
nextflow_config - Config default value correct: params.seed= 100
nextflow_config - Config default value correct: params.publish_dir_mode= copy
nextflow_config - Config default value correct: params.max_multiqc_email_size= 25.MB
nextflow_config - Config default value correct: params.validate_params= true
nextflow_config - Config default value correct: params.pipelines_testdata_base_path= https://raw.githubusercontent.com/nf-core/test-datasets/
nextflow_config - Config default value correct: params.custom_config_version= master
nextflow_config - Config default value correct: params.custom_config_base= https://raw.githubusercontent.com/nf-core/configs/master
files_unchanged - .prettierrc.yml matches the template
files_unchanged - CODE_OF_CONDUCT.md matches the template
files_unchanged - LICENSE matches the template
files_unchanged - .github/.dockstore.yml matches the template
files_unchanged - .github/CONTRIBUTING.md matches the template
files_unchanged - .github/ISSUE_TEMPLATE/bug_report.yml matches the template
files_unchanged - .github/ISSUE_TEMPLATE/config.yml matches the template
files_unchanged - .github/ISSUE_TEMPLATE/feature_request.yml matches the template
files_unchanged - .github/PULL_REQUEST_TEMPLATE.md matches the template
files_unchanged - .github/workflows/branch.yml matches the template
files_unchanged - .github/workflows/linting_comment.yml matches the template
files_unchanged - .github/workflows/linting.yml matches the template
files_unchanged - assets/email_template.html matches the template
files_unchanged - assets/email_template.txt matches the template
files_unchanged - assets/sendmail_template.txt matches the template
files_unchanged - assets/nf-core-ampliseq_logo_light.png matches the template
files_unchanged - docs/images/nf-core-ampliseq_logo_light.png matches the template
files_unchanged - docs/images/nf-core-ampliseq_logo_dark.png matches the template
files_unchanged - docs/README.md matches the template
files_unchanged - .gitignore matches the template
files_unchanged - .prettierignore matches the template
actions_awstest - '.github/workflows/awstest.yml' is triggered correctly
actions_awsfulltest - .github/workflows/awsfulltest.yml is triggered correctly
actions_awsfulltest - .github/workflows/awsfulltest.yml does not use -profile test
readme - README Zenodo placeholder was replaced with DOI.
plugin_includes - No wrong validation plugin imports have been found
pipeline_name_conventions - Name adheres to nf-core convention
template_strings - Did not find any Jinja template strings (0 files)
schema_lint - Schema lint passed
schema_lint - Schema title + description lint passed
schema_lint - Input mimetype lint passed: 'text/tsv'
schema_params - Schema matched params returned from nextflow config
system_exit - No System.exit calls found
actions_schema_validation - Workflow validation passed: linting.yml
actions_schema_validation - Workflow validation passed: branch.yml
actions_schema_validation - Workflow validation passed: fix-linting.yml
actions_schema_validation - Workflow validation passed: release-announcements.yml
actions_schema_validation - Workflow validation passed: awsfulltest.yml
actions_schema_validation - Workflow validation passed: template_version_comment.yml
actions_schema_validation - Workflow validation passed: download_pipeline.yml
actions_schema_validation - Workflow validation passed: ci.yml
actions_schema_validation - Workflow validation passed: clean-up.yml
actions_schema_validation - Workflow validation passed: awstest.yml
actions_schema_validation - Workflow validation passed: linting_comment.yml
merge_markers - No merge markers found in pipeline files
modules_json - Only installed modules found in modules.json
multiqc_config - assets/multiqc_config.yml found and not ignored.
multiqc_config - assets/multiqc_config.yml contains report_section_order
multiqc_config - assets/multiqc_config.yml contains export_plots
multiqc_config - assets/multiqc_config.yml contains report_comment
multiqc_config - assets/multiqc_config.yml follows the ordering scheme of the minimally required plugins.
multiqc_config - assets/multiqc_config.yml contains a matching 'report_comment'.
multiqc_config - assets/multiqc_config.yml contains 'export_plots: true'.
modules_structure - modules directory structure is correct 'modules/nf-core/TOOL/SUBTOOL'
base_config - conf/base.config found and not ignored.
base_config - QIIME2_EXTRACT found in conf/base.config and Nextflow scripts.
modules_config - conf/modules.config found and not ignored.
modules_config - RENAME_RAW_DATA_FILES found in conf/modules.config and Nextflow scripts.
modules_config - FASTQC found in conf/modules.config and Nextflow scripts.
modules_config - CUTADAPT_BASIC found in conf/modules.config and Nextflow scripts.
modules_config - CUTADAPT_READTHROUGH found in conf/modules.config and Nextflow scripts.
modules_config - CUTADAPT_DOUBLEPRIMER found in conf/modules.config and Nextflow scripts.
modules_config - CUTADAPT_TAXONOMY found in conf/modules.config and Nextflow scripts.
modules_config - CUTADAPT_SUMMARY_MERGE found in conf/modules.config and Nextflow scripts.
modules_config - DADA2_QUALITY1 found in conf/modules.config and Nextflow scripts.
modules_config - TRUNCLEN found in conf/modules.config and Nextflow scripts.
modules_config - DADA2_FILTNTRIM found in conf/modules.config and Nextflow scripts.
modules_config - DADA2_QUALITY2 found in conf/modules.config and Nextflow scripts.
modules_config - DADA2_ERR found in conf/modules.config and Nextflow scripts.
modules_config - NOVASEQ_ERR found in conf/modules.config and Nextflow scripts.
modules_config - DADA2_DENOISING found in conf/modules.config and Nextflow scripts.
modules_config - DADA2_RMCHIMERA found in conf/modules.config and Nextflow scripts.
modules_config - DADA2_STATS found in conf/modules.config and Nextflow scripts.
modules_config - DADA2_MERGE found in conf/modules.config and Nextflow scripts.
modules_config - DADA2_SPLITREGIONS found in conf/modules.config and Nextflow scripts.
modules_config - SIDLE_DBFILT found in conf/modules.config and Nextflow scripts.
modules_config - SIDLE_DBEXTRACT found in conf/modules.config and Nextflow scripts.
modules_config - SIDLE_TRIM found in conf/modules.config and Nextflow scripts.
modules_config - SIDLE_ALIGN found in conf/modules.config and Nextflow scripts.
modules_config - SIDLE_DBRECON found in conf/modules.config and Nextflow scripts.
modules_config - SIDLE_TABLERECON found in conf/modules.config and Nextflow scripts.
modules_config - SIDLE_TAXRECON found in conf/modules.config and Nextflow scripts.
modules_config - SIDLE_FILTTAX found in conf/modules.config and Nextflow scripts.
modules_config - SIDLE_SEQRECON found in conf/modules.config and Nextflow scripts.
modules_config - SIDLE_TREERECON found in conf/modules.config and Nextflow scripts.
modules_config - BARRNAP found in conf/modules.config and Nextflow scripts.
modules_config - BARRNAPSUMMARY found in conf/modules.config and Nextflow scripts.
modules_config - FILTER_SSU found in conf/modules.config and Nextflow scripts.
modules_config - FILTER_LEN_ASV found in conf/modules.config and Nextflow scripts.
modules_config - FILTER_CODONS found in conf/modules.config and Nextflow scripts.
modules_config - MERGE_STATS_STD found in conf/modules.config and Nextflow scripts.
modules_config - ITSX_CUTASV found in conf/modules.config and Nextflow scripts.
modules_config - FILTER_LEN_ITSX found in conf/modules.config and Nextflow scripts.
modules_config - FORMAT_TAXONOMY found in conf/modules.config and Nextflow scripts.
modules_config - DADA2_TAXONOMY found in conf/modules.config and Nextflow scripts.
modules_config - DADA2_ADDSPECIES found in conf/modules.config and Nextflow scripts.
modules_config - FORMAT_TAXONOMY_SINTAX found in conf/modules.config and Nextflow scripts.
modules_config - VSEARCH_SINTAX found in conf/modules.config and Nextflow scripts.
modules_config - FORMAT_TAXRESULTS_SINTAX found in conf/modules.config and Nextflow scripts.
modules_config - KRAKEN2_KRAKEN2 found in conf/modules.config and Nextflow scripts.
modules_config - FORMAT_TAXRESULTS_KRAKEN2 found in conf/modules.config and Nextflow scripts.
modules_config - VSEARCH_USEARCHGLOBAL found in conf/modules.config and Nextflow scripts.
modules_config - VSEARCH_CLUSTER found in conf/modules.config and Nextflow scripts.
modules_config - FILTER_CLUSTERS found in conf/modules.config and Nextflow scripts.
modules_config - ASSIGNSH found in conf/modules.config and Nextflow scripts.
modules_config - FORMAT_TAXONOMY_QIIME found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_EXTRACT found in conf/modules.config and Nextflow scripts.
modules_config - HMMER_HMMBUILD found in conf/modules.config and Nextflow scripts.
modules_config - HMMER_UNALIGNREF found in conf/modules.config and Nextflow scripts.
modules_config - HMMER_HMMALIGNREF found in conf/modules.config and Nextflow scripts.
modules_config - HMMER_HMMALIGNQUERY found in conf/modules.config and Nextflow scripts.
modules_config - HMMER_MASK found in conf/modules.config and Nextflow scripts.
modules_config - HMMER_MASKQUERY found in conf/modules.config and Nextflow scripts.
modules_config - HMMER_MASKREF found in conf/modules.config and Nextflow scripts.
modules_config - HMMER_AFAFORMATQUERY found in conf/modules.config and Nextflow scripts.
modules_config - HMMER_AFAFORMATREF found in conf/modules.config and Nextflow scripts.
modules_config - MAFFT found in conf/modules.config and Nextflow scripts.
modules_config - EPANG_PLACE found in conf/modules.config and Nextflow scripts.
modules_config - GAPPA_GRAFT found in conf/modules.config and Nextflow scripts.
modules_config - GAPPA_ASSIGN found in conf/modules.config and Nextflow scripts.
modules_config - GAPPA_HEATTREE found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_INASV found in conf/modules.config and Nextflow scripts.
modules_config - FORMAT_PPLACETAX found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_INASV_BPAVG found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_TABLEFILTERTAXA found in conf/modules.config and Nextflow scripts.
modules_config - FILTER_STATS found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_BARPLOT found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_BPAVG found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_EXPORT_ABSOLUTE found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_EXPORT_RELASV found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_TREE found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_FILTERSAMPLES_ANCOM found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_ALPHARAREFACTION found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_DIVERSITY_CORE found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_DIVERSITY_ADONIS found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_ANCOM_TAX found in conf/modules.config and Nextflow scripts.
modules_config - QIIME2_ANCOMBC_TAX found in conf/modules.config and Nextflow scripts.
modules_config - ANCOMBC_FORMULA_TAX found in conf/modules.config and Nextflow scripts.
modules_config - PICRUST found in conf/modules.config and Nextflow scripts.
modules_config - SBDIEXPORT found in conf/modules.config and Nextflow scripts.
modules_config - SBDIEXPORTREANNOTATE found in conf/modules.config and Nextflow scripts.
modules_config - PHYLOSEQ found in conf/modules.config and Nextflow scripts.
modules_config - MULTIQC found in conf/modules.config and Nextflow scripts.
modules_config - SUMMARY_REPORT found in conf/modules.config and Nextflow scripts.
nfcore_yml - Repository type in .nf-core.yml is valid: pipeline
nfcore_yml - nf-core version in .nf-core.yml is set to the latest version: 3.0.2
version_consistency - Version tags are numeric and consistent between container, release tag and config.
included_configs - Pipeline config includes custom configs.

Run details

nf-core/tools version 3.0.2
Run at 2024-11-14 13:15:57

Prepare release 2.12.0

erikrikarddaniel

Looks all good to me.

mashehu · 2024-11-14T12:38:20Z

modules/local/picrust.nf

any ambition on adding the local modules to nf-core/modules?

afaik this module only helpful for 16S amplicon sequencing, so nothing of broader interest. True for most if not all local modules. So not worth the trouble I think.

CHANGELOG.md

d4straub and others added 26 commits August 5, 2024 16:00

bump version to 2.12.0dev

524d298

update CHANGELOG

2f7c754

Merge pull request #772 from d4straub/bump-version-2.12.0dev

ba86470

Bump version 2.12.0dev

merging template updates v3.0.2

fa472fb

fix typo

47efc2f

[automated] Fix code linting

754d92d

update nf-schema and json schemata

68b8731

update md5sums for multiqc files

c9ee1e7

Merge branch 'merging-template-updates_3.0.2' of https://github.com/d…

36e1ef1

…4straub/ampliseq into merging-template-updates_3.0.2

activate nf-schema lenientMode

4ffc595

fix typo

07fcdd8

update md5sums in snaps

a106c5d

replace https://data.ace.uq.edu.au/public/gtdb/data by https://data.g…

fe2ec7b

…tdb.ecogenomic.org

update CHANGELOG

e19a70e

remove unused code

d288b34

update test profile snap

1889bab

correct indentation

ce6684f

Merge pull request #785 from d4straub/merging-template-updates_3.0.2

0ac3093

merging template updates v3.0.2

fix --dada_ref_taxonomy silva=132

12c0370

Merge pull request #786 from d4straub/fix-dada_ref_taxonomy-silva132

f95cf02

fix --dada_ref_taxonomy silva=132

Remove white spaces in process tags

d8e7eb6

update changelog

08bafc9

Merge pull request #792 from d4straub/rm-white-space-in-process-tag

65bada8

Remove white space in process tags

update nf-core modules and picrust

4e4c124

update changelog

2c22f74

Merge pull request #793 from d4straub/update-modules-2.12.0dev

9cb08c2

Update Picrust2 and nf-core modules

d4straub added 3 commits November 13, 2024 11:37

bump version 2.12.0

45a764c

update CHANGELOG

96be42b

include custom configs

0052ee0

update docs

88b5322

d4straub mentioned this pull request Nov 13, 2024

Prepare release 2.12.0 #795

Merged

11 tasks

d4straub and others added 2 commits November 13, 2024 15:48

Merge pull request #795 from d4straub/prepare-release-2.12.0

675d60b

Prepare release 2.12.0

disable checking for reviews on workflow_dispatch

9162fe0

d4straub changed the title ~~Release 2.12.0 - TEST~~ Release 2.12.0 Nov 14, 2024

d4straub marked this pull request as ready for review November 14, 2024 10:49

erikrikarddaniel approved these changes Nov 14, 2024

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mashehu approved these changes Nov 14, 2024

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d4straub commented Nov 14, 2024

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Release 2.12.0 #794

Release 2.12.0 #794

d4straub commented Nov 13, 2024 •

edited

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edited

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❗ Test warnings:

❔ Tests ignored:

✅ Tests passed:

Run details

erikrikarddaniel left a comment

mashehu Nov 14, 2024

d4straub Nov 14, 2024

Release 2.12.0 #794

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Release 2.12.0 #794

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d4straub commented Nov 13, 2024 • edited Loading

PR checklist

github-actions bot commented Nov 13, 2024 • edited Loading

nf-core pipelines lint overall result: Passed ✅ ⚠️

❗ Test warnings:

❔ Tests ignored:

✅ Tests passed:

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mashehu Nov 14, 2024

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d4straub Nov 14, 2024

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d4straub commented Nov 13, 2024 •

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github-actions bot commented Nov 13, 2024 •

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`nf-core pipelines lint` overall result: Passed ✅ ⚠️