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Limit upset plot number of combinations #208

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Merged
nictru merged 1 commit into from
Jul 21, 2025
Merged

Limit upset plot number of combinations #208

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12 changes: 9 additions & 3 deletions modules/local/combinebeds/filter/templates/filter.py
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Original file line number Diff line number Diff line change
Expand Up @@ -98,14 +98,20 @@ def format_yaml_like(data: dict, indent: int = 0) -> str:
continue
memberships = series.to_list()
dataset = upsetplot.from_memberships(memberships)

n_combinations = 50

# Limit to top n_combinations largest combinations if there are more than n_combinations
if len(dataset) > n_combinations:
dataset = dataset.nlargest(n_combinations)

upsetplot.plot(dataset,
orientation='horizontal',
show_counts=True,
subset_size="count",
min_degree=2,
min_subset_size=min(50, int(n_bsjs * 0.02)))
subset_size="count")
plot_file = f"{prefix}_{col}.upset.png"
plt.savefig(plot_file)
plt.close()

image_string = base64.b64encode(open(plot_file, "rb").read()).decode("utf-8")
image_html = f'<div class="mqc-custom-content-image"><img src="data:image/png;base64,{image_string}" /></div>'
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