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Merge pull request #749 from davidecarlson/master
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Updates to the SeaWulf profile
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jfy133 authored Sep 17, 2024
2 parents a43a1ea + 0271472 commit 5231823
Showing 1 changed file with 7 additions and 4 deletions.
11 changes: 7 additions & 4 deletions conf/seawulf.config
Original file line number Diff line number Diff line change
Expand Up @@ -2,22 +2,25 @@ singularity {
enabled = true
autoMounts = true
}

process {
executor = 'slurm'
maxRetries = 4
queue = { task.cpus <= 40 ? 'long-40core' : 'long-96core' }
maxRetries = 12
queue = { task.time <= 4.h ? 'short-40core-shared' : task.memory >= 150.GB ? ' long-96core-shared' : task.cpus > 10 ? 'long-96core-shared' : 'long-40core-shared' }
}

params {
config_profile_contact = 'David Carlson (@davidecarlson)'
config_profile_url = 'https://it.stonybrook.edu/services/high-performance-computing'
config_profile_description = 'Stony Brook Universitys seaWulf cluster profile provided by nf-core/configs.'
max_time = 48.h
max_time = 24.h
max_memory = 251.GB
max_cpus = 96

}

executor {
queueSize = 25
queueSize = 99
submitRateLimit = '5 sec'

}

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