Clean setonix conf, add max params

nf-core · Oct 15, 2023 · deac840 · deac840
1 parent 06115d0
commit deac840
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/conf/pawsey_setonix.config b/conf/pawsey_setonix.config
@@ -3,6 +3,8 @@ params {
   config_profile_description = 'Pawsey Setonix HPC profile provided by nf-core/configs'
   config_profile_contact = 'Sarah Beecroft (@SarahBeecroft), Georgie Samaha (@georgiesamaha)'
   config_profile_url = 'https://support.pawsey.org.au/documentation/display/US/Setonix+User+Guide'
+  max_cpus = 64
+  max_memory = 230.Gb
 }
 
 // Enable use of Singularity to run containers
@@ -25,5 +27,5 @@ process {
   module = 'singularity/3.11.4-slurm'
   cache = 'lenient'
   stageInMode = 'symlink'
-  queue = { task.memory < 238.GB ? 'work' : (task.memory > 230.GB && task.memory <= 980.GB ? 'highmem' : '') }
+  queue = { task.memory < 230.GB ? 'work' : (task.memory > 230.GB && task.memory <= 980.GB ? 'highmem' : '') }
 }