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JohannesKersting committed Aug 20, 2024
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Expand Up @@ -7,5 +7,4 @@ This will automatically download and apply ['daisybio.config'](../conf/daisybio.
The config file will set slurm as a scheduler for the compute cluster, define max resources, and specify cache locations for singularity, apptainer, and iGenomes.
Pipeline-specific parameters still need to be configured manually.

Work directories will be kept at `/nfs/scratch/nf-core_work/` in a directory named after the full path of the launch directory ("." separated). Thy are automatically removed after a successful pipeline run. To keep the intermediate file, e.g. for using the `-resume` function, add `keep_work` as a profile: `-profile daisybio,<singularity/apptainer>,keep_work`.

Work directories will be kept at `/nfs/scratch/nf-core_work/` in a directory named after the full path of the launch directory ("." separated). Thy are automatically removed after a successful pipeline run. To keep the intermediate file, e.g. for using the `-resume` function, add `keep_work` as a profile: `-profile daisybio,<singularity/apptainer>,keep_work`.

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