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add cancer splicing lib to starfusion ref #610

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merged 12 commits into from
Mar 25, 2025
+637 −252
Merged

add cancer splicing lib to starfusion ref #610

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a317529
add cancer splicing lib to starfusion ref
nvnieuwk Jan 21, 2025
43b6045
update changelog
nvnieuwk Jan 21, 2025
472da39
update prepgenomelib resources
nvnieuwk Jan 21, 2025
0915989
fix stub test snapshot
nvnieuwk Jan 21, 2025
10d431d
add param instead of hardcoded url
nvnieuwk Jan 22, 2025
12bcacf
Merge branch 'dev' into ctatsplicing-ref
nvnieuwk Mar 18, 2025
94049a6
add tests for prepgenomelib (TODO snapshot tomorrow)
nvnieuwk Mar 18, 2025
562d5f6
Merge branch 'dev' into ctatsplicing-ref
nvnieuwk Mar 19, 2025
013773c
add prepgenome lib snap
nvnieuwk Mar 19, 2025
0f26578
fix test_build snap
nvnieuwk Mar 19, 2025
4618f19
ignore unstable files
nvnieuwk Mar 19, 2025
bd22559
add an error message for conda/mamba runs
nvnieuwk Mar 20, 2025
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Merge branch 'dev' into ctatsplicing-ref
@nvnieuwk
nvnieuwk authored Mar 18, 2025

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commit 12bcacf3a43db5d2ce76f9988fac4fc9017999da
2 changes: 2 additions & 0 deletions CHANGELOG.md
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@@ -29,6 +29,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Add nf-test to local subworkflow: `STARFUSION_WORKFLOW`. [#597](https://github.com/nf-core/rnafusion/pull/597)
- Add nf-test to local module: `FUSIONINSPECTOR`. [#601](https://github.com/nf-core/rnafusion/pull/601)
- Added `CTATSPLICING_PREPGENOMELIB` to update the starfusion genome library directory with a cancer splicing index. [#610](https://github.com/nf-core/rnafusion/pull/610)
- Add nf-test to local subworkflow: `FUSIONREPORT_WORKFLOW`. [#607](https://github.com/nf-core/rnafusion/pull/607)
- Add nf-test to local module: `ARRIBA_VISUALISATION`. [#625](https://github.com/nf-core/rnafusion/pull/625)

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