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Add fgumi/extract to nf-core modules

Status: Open.

#540 In nf-core/smrnaseq;

· atrigila opened on Apr 29, 2026

Consider fgumi for umi handlign

enhancementNew feature or requestNew feature or request

Status: Open.

#535 In nf-core/smrnaseq;

· apeltzer opened on Apr 1, 2026

Workflow Diagram - smrnaseq

documentation

Status: Open.

Enhancement

#534 In nf-core/smrnaseq;

· bebyrne opened on Mar 11, 2026

running pipeline on sheep data

bugSomething isn't workingSomething isn't working

Status: Open.

#533 In nf-core/smrnaseq;

· mkrzak opened on Mar 6, 2026

UMIcollapse deduplication algorithm

enhancementNew feature or requestNew feature or request

Status: Open.

#531 In nf-core/smrnaseq;

· rachelgriffard opened on Feb 6, 2026

Deduplication after alignment

enhancementNew feature or requestNew feature or request

Status: Open.

#530 In nf-core/smrnaseq;

· rachelgriffard opened on Feb 6, 2026

Strict syntax

enhancementNew feature or requestNew feature or request

Status: Open.

#529 In nf-core/smrnaseq;

· atrigila opened on Jan 30, 2026

Confusing Regarding Documentation

documentation

Status: Open.

#528 In nf-core/smrnaseq;

· YasirKusay opened on Jan 28, 2026

genome-wide smrna detection and quantification

enhancementNew feature or requestNew feature or request

Status: Open.

#409 In nf-core/smrnaseq;

· lpantano opened on Sep 6, 2024

mirs ID

enhancementNew feature or requestNew feature or request

Status: Open.

#357 In nf-core/smrnaseq;

· TarekGharsalli opened on Jun 24, 2024

bowtie parameters customization

enhancementNew feature or requestNew feature or request

Status: Open.

#356 In nf-core/smrnaseq;

· Cristinex opened on Jun 19, 2024

Running Genome Quantification

questionFurther information is requestedFurther information is requested

Status: Open.

#355 In nf-core/smrnaseq;

· NicolasMorando opened on Jun 14, 2024