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nf-rhinosys

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  1. rnaseq rnaseq Public

    Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Nextflow

  2. modules modules Public

    Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow

  3. tools tools Public

    Forked from nf-core/tools

    Python package with helper tools for the nf-core community.

    Python

  4. atacseq atacseq Public

    Forked from nf-core/atacseq

    ATAC-seq peak-calling, QC and differential analysis pipeline

    Nextflow

  5. sarek sarek Public

    Forked from nf-core/sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Nextflow

  6. viralrecon viralrecon Public

    Forked from nf-core/viralrecon

    Assembly and intrahost/low-frequency variant calling for viral samples

    Nextflow

Repositories

Showing 7 of 7 repositories
  • tools Public Forked from nf-core/tools

    Python package with helper tools for the nf-core community.

    nf-rhinosys/tools’s past year of commit activity
    Python 0 MIT 193 0 0 Updated Mar 29, 2023
  • sarek Public Forked from nf-core/sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    nf-rhinosys/sarek’s past year of commit activity
    Nextflow 0 MIT 432 0 0 Updated Mar 29, 2023
  • viralrecon Public Forked from nf-core/viralrecon

    Assembly and intrahost/low-frequency variant calling for viral samples

    nf-rhinosys/viralrecon’s past year of commit activity
    Nextflow 0 MIT 117 0 0 Updated Mar 29, 2023
  • atacseq Public Forked from nf-core/atacseq

    ATAC-seq peak-calling, QC and differential analysis pipeline

    nf-rhinosys/atacseq’s past year of commit activity
    Nextflow 0 MIT 125 0 0 Updated Mar 29, 2023
  • rnaseq Public Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    nf-rhinosys/rnaseq’s past year of commit activity
    Nextflow 0 MIT 728 0 0 Updated Mar 29, 2023
  • modules Public Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    nf-rhinosys/modules’s past year of commit activity
    Nextflow 0 MIT 756 0 0 Updated Mar 29, 2023
  • configs Public Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    nf-rhinosys/configs’s past year of commit activity
    Nextflow 0 MIT 289 0 0 Updated Mar 28, 2023

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