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Changes benchmarked inc speed ~1.5hrs -> 5mins #392

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Nov 30, 2023
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2 changes: 1 addition & 1 deletion em_workflows/config.py
Original file line number Diff line number Diff line change
Expand Up @@ -70,7 +70,7 @@ class Config:
HIGH_SLURM_EXECUTOR = DaskTaskRunner(
cluster_class=SLURM_exec,
cluster_kwargs=dict(
cores=40,
cores=64,
memory="512G",
),
)
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2 changes: 1 addition & 1 deletion em_workflows/constants.py
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
SMALL_DIM = 300
RECHUNK_SIZE = 512

BIOFORMATS_NUM_WORKERS = 3
BIOFORMATS_NUM_WORKERS = 60
# This is expected to be less than the available memory for a dask worker
# Ref em_workflows/config:SLURM_exec
JAVA_MAX_HEAP_SIZE = "-Xmx40G"
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