The sitkCore package used by the Radiomics Analysis Portal (RAP) contains common utilities for developing image analysis algorithms that use data provided by the Tuberculosis Portals Program (TBPortals). The tools are written in Python and provided as an installable Python package. The application programming interface (API) is documented in Sphinx: https://niaid.github.io/rap_sitkCore
Dependencies are conventionally specified in pyproject.toml, and dependent packages are installed automatically by pip. The package can be directly installed from the Github with the following command:
python -m pip install git+https://github.com/niaid/[email protected]
For pydicom to support more encodings additional pylibjpeg packages can be install. These dependencies are specified as extra requirements in the setup.py. Specifying the package a "rap_sitkcore[pylibjpeg]" will install the extra packages.
The Python module is also distributed as a wheel binary package. Wheels from the master branch can be manually downloaded from Github Actions in the "python-package" artifact.
Download the latest tagged release from the Github Releases page.
Please use the GitHub Issues for support.
Additionally, we can be emailed at: [email protected] Please include "rap_sitCore" in the subject line.