oceanmodeling · uturuncoglu · Aug 7, 2025 · Aug 7, 2025 · Aug 21, 2025 · Aug 22, 2025
diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -16,7 +16,7 @@ list(APPEND CMAKE_MODULE_PATH ${CMAKE_SOURCE_DIR}/CMakeModules/Modules)
 ###############################################################################
 
 # Valid applications and choices
-list(APPEND VALID_APPS ATM ATMAERO ATMAQ ATMW ATMWM ATML ATMF LND LND-LM4 S2S S2SL S2SA S2SW S2SWA S2SWL S2SWAL ATM_DS2S ATM_DS2S-PCICE HAFS HAFSW HAFS-MOM6 HAFS-MOM6W HAFS-ALL NG-GODAS CSTLA CSTLPA CSTLAW CSTLPAW CSTLF CSTLFW CSTLR CSTLRW CSTLRC CSTLRCW CSTLS CSTLPS CSTLSW CSTLPSW CSTLP CSTLW CSTL-ALL)
+list(APPEND VALID_APPS ATM ATMAERO ATMAQ ATMW ATMWM ATML ATMF LND LND-LM4 S2S S2SL S2SA S2SW S2SWA S2SWL S2SWAL ATM_DS2S ATM_DS2S-PCICE HAFS HAFSW HAFS-MOM6 HAFS-MOM6W HAFS-ALL NG-GODAS CSTLA CSTLC CSTLF CSTLS CSTLSC CSTLSW CSTLR CSTLW CSTL-ALL)
 set(APP NONE CACHE BOOL "Application Name")
 if(NOT (APP IN_LIST VALID_APPS))
   message(FATAL_ERROR "${APP} is not a valid application.\nValid Applications are: ${VALID_APPS}")

diff --git a/cmake/configure_apps.cmake b/cmake/configure_apps.cmake
@@ -128,30 +128,34 @@ if(APP MATCHES "^(LND-LM4)$")
   set(FMS        ON  CACHE BOOL "Enable FMS"                 FORCE)
 endif()
 
-if(APP MATCHES "^(CSTLA|CSTLPA|CSTLAW|CSTLPAW|CSTLF|CSTLFW|CSTLR|CSTLRW|CSTLRC|CSTLRCW|CSTLS|CSTLPS|CSTLSW|CSTLPSW|CSTLP|CSTLW|CSTL-ALL)$")
+if(APP MATCHES "^(CSTLA|CSTLC|CSTLF|CSTLS|CSTLSC|CSTLSW|CSTLR|CSTLW|CSTL-ALL)$")
   set(CMEPS      ON  CACHE BOOL "Enable CMEPS"               FORCE)
   set(CDEPS      ON  CACHE BOOL "Enable CDEPS"               FORCE)
-  if(APP MATCHES "^(CSTLA|CSTLPA|CSTLAW|CSTLPAW|CSTL-ALL)$")
+  if(APP MATCHES "^(CSTLA|CSTL-ALL)$")
     set(ADCIRC   ON  CACHE BOOL "Enable ADCIRC"              FORCE)
     message("Configuring UFS app in COASTAL with ADCIRC model")
   endif()
-  if(APP MATCHES "^(CSTLF|CSTLFW|CSTL-ALL)$")
+  if(APP MATCHES "^(CSTLC|CSTL-ALL)$")
+    set(CICE6    ON  CACHE BOOL "Enable CICE6"               FORCE)
+    message("Configuring UFS app in COASTAL with CICE6 model")
+  endif()
+  if(APP MATCHES "^(CSTLF|CSTL-ALL)$")
     set(FVCOM    ON  CACHE BOOL "Enable FVCOM"               FORCE)
     message("Configuring UFS app in COASTAL with FVCOM model")
   endif()
-  if(APP MATCHES "^(CSTLR|CSTLRW|CSTLRC|CSTLRCW|CSTL-ALL)$")
+  if(APP MATCHES "^(CSTLR|CSTL-ALL)$")
     set(ROMS     ON  CACHE BOOL "Enable ROMS"                FORCE)
     message("Configuring UFS app in COASTAL with ROMS model")
   endif()
-  if(APP MATCHES "^(CSTLS|CSTLPS|CSTLSW|CSTLPSW|CSTL-ALL)$")
+  if(APP MATCHES "^(CSTLS|CSTLSC|CSTLSW|CSTL-ALL)$")
     set(SCHISM   ON  CACHE BOOL "Enable SCHISM"              FORCE)
     message("Configuring UFS app in COASTAL with SCHISM model")
   endif()
-  if(APP MATCHES "^(CSTLP|CSTLPA|CSTLPAW|CSTLPS|CSTLPSW|CSTL-ALL)$")
+  if(APP MATCHES "^(CSTLP|CSTL-ALL)$")
     set(PAHM     ON  CACHE BOOL "Enable PAHM"                FORCE)
     message("Configuring UFS app in COASTAL with PAHM model")
   endif()
-  if(APP MATCHES "^(CSTLW|CSTLAW|CSTLPAW|CSTLFW|CSTLSW|CSTLRW|CSTLRCW|CSTLSW|CSTLPSW|CSTL-ALL)$")
+  if(APP MATCHES "^(CSTLW|CSTL-ALL)$")
     set(WW3      ON  CACHE BOOL "Enable WAVEWATCH III"       FORCE)
     message("Configuring UFS app in HAFS with Waves mode")
   endif()

diff --git a/tests/default_vars.sh b/tests/default_vars.sh
@@ -1742,6 +1742,7 @@ export_hafs_docn_cdeps ()
   export CMEPS_PIO_ROOT=-99
   export DOCN_IN_CONFIGURE=docn_in.IN
   export DOCN_STREAM_CONFIGURE=hafs_docn.streams.IN
+  export EXPORT_ALL=.false.
 }
 
 export_hafs_regional ()

diff --git a/tests/fv3_conf/coastal_cice_run.IN b/tests/fv3_conf/coastal_cice_run.IN
@@ -0,0 +1,16 @@
+if [ ! -d "INPUT" ]; then
+  mkdir INPUT 
+fi
+if [ ! -d "OUTPUT" ]; then
+  mkdir OUTPUT
+fi
+if [ ! -d "RESTART" ]; then
+  mkdir RESTART
+fi
+if [ ! -d "history" ]; then
+  mkdir history
+fi
+
+cp -r @[INPUTDATA_ROOT]/CICE/$HURR/$CPL_CONF/Grid INPUT/.
+cp -r @[INPUTDATA_ROOT]/CICE/$HURR/$CPL_CONF/Boundary INPUT/.
+cp @[INPUTDATA_ROOT]/CICE/$HURR/$CPL_CONF/ice_in .
diff --git a/tests/fv3_conf/coastal_datm.IN b/tests/fv3_conf/coastal_datm.IN
@@ -0,0 +1,7 @@
+if [ ! -d "INPUT" ]; then
+  mkdir INPUT
+fi
+
+cd INPUT
+rsync -arv @[INPUTDATA_ROOT]/DATM_input_data/$HURR/* .
+cd -
diff --git a/tests/fv3_conf/coastal_datm_atmmesh.IN b/tests/fv3_conf/coastal_datm_atmmesh.IN
diff --git a/tests/fv3_conf/coastal_docn.IN b/tests/fv3_conf/coastal_docn.IN
@@ -0,0 +1,7 @@
+if [ ! -d "INPUT" ]; then
+  mkdir INPUT
+fi
+
+cd INPUT
+rsync -arv @[INPUTDATA_ROOT]/DOCN_input_data/$HURR/* .
+cd -
diff --git a/tests/fv3_conf/coastal_schism_run.IN b/tests/fv3_conf/coastal_schism_run.IN
@@ -22,3 +22,9 @@ for IFILE in @[INPUTDATA_ROOT]/SCHISM/$HURR/$CPL_CONF/*.th; do
     cp $IFILE .
   fi
 done
+
+for IFILE in @[INPUTDATA_ROOT]/SCHISM/$HURR/$CPL_CONF/*.nc; do
+  if [ -f "$IFILE" ]; then
+    cp $IFILE .
+  fi
+done
diff --git a/tests/fv3_conf/coastal_ww3_run.IN b/tests/fv3_conf/coastal_ww3_run.IN
@@ -5,10 +5,25 @@ if [ ! -d "RESTART" ]; then
   mkdir RESTART
 fi
 
-cp @[INPUTDATA_ROOT]/WW3/$HURR/$CPL_CONF/bound.nc .
-cp @[INPUTDATA_ROOT]/WW3/$HURR/$CPL_CONF/inlet.msh .
+for IFILE in @[INPUTDATA_ROOT]/WW3/$HURR/$CPL_CONF/*.nc; do
+  if [ -f "$IFILE" ]; then
+    cp $IFILE .
+  fi
+done
+
+for IFILE in @[INPUTDATA_ROOT]/WW3/$HURR/$CPL_CONF/*.msh; do
+  if [ -f "$IFILE" ]; then
+    cp $IFILE .
+  fi
+done
+
+for IFILE in @[INPUTDATA_ROOT]/WW3/$HURR/$CPL_CONF/*.list; do
+  if [ -f "$IFILE" ]; then
+    cp $IFILE .
+  fi
+done
+
 cp @[INPUTDATA_ROOT]/WW3/$HURR/$CPL_CONF/ww3_* .
-cp @[INPUTDATA_ROOT]/WW3/$HURR/$CPL_CONF/mesh.shinnecock.cdf5.nc .
 cp @[INPUTDATA_ROOT]/WW3/$HURR/$CPL_CONF/mod_def.* .
 
 if [[ $CPL_CONF == 'ww3' ]]; then

diff --git a/tests/parm/datm.streams.coastal.multi.IN b/tests/parm/datm.streams.coastal.multi.IN
@@ -0,0 +1,31 @@
+stream_info:               @[FILENAME_BASE]01 @[FILENAME_BASE]02
+
+taxmode01:                 limit
+mapalgo01:                 @[mapalgo01]
+tInterpAlgo01:             @[tinterpalgo01] 
+readMode01:                single
+dtlimit01:                 @[dtlimit]
+stream_offset01:           @[STREAM_OFFSET01]
+yearFirst01:               @[SYEAR]
+yearLast01:                @[SYEAR]
+yearAlign01:               @[SYEAR]
+stream_vectors01:          @[STREAM_VECTORS]
+stream_mesh_file01:        "INPUT/@[MESH_ATM]"
+stream_lev_dimname01:      null
+stream_data_files01:       @[stream_files01]
+stream_data_variables01:   @[stream_variables01]
+
+taxmode02:                 limit
+mapalgo02:                 @[mapalgo02]
+tInterpAlgo02:             @[tinterpalgo02]
+readMode02:                single
+dtlimit02:                 @[dtlimit]
+stream_offset02:           @[STREAM_OFFSET02]
+yearFirst02:               @[SYEAR]
+yearLast02:                @[SYEAR]
+yearAlign02:               @[SYEAR]
+stream_vectors02:          @[STREAM_VECTORS]
+stream_mesh_file02:        "INPUT/@[MESH_ATM]"
+stream_lev_dimname02:      null
+stream_data_files02:       @[stream_files02]
+stream_data_variables02:   @[stream_variables02]
diff --git a/tests/parm/docn.streams.coastal.IN b/tests/parm/docn.streams.coastal.IN
@@ -0,0 +1,15 @@
+stream_info:               @[FILENAME_BASE]01
+taxmode01:                 @[taxmode] 
+mapalgo01:                 @[mapalgo]
+tInterpAlgo01:             linear
+readMode01:                single
+dtlimit01:                 @[dtlimit]
+stream_offset01:           @[STREAM_OFFSET]
+yearFirst01:               @[SYEAR]
+yearLast01:                @[SYEAR]
+yearAlign01:               @[SYEAR]
+stream_vectors01:          @[STREAM_VECTORS]
+stream_mesh_file01:        "INPUT/@[MESH_OCN]"
+stream_lev_dimname01:      null
+stream_data_files01:       @[stream_files]
+stream_data_variables01:   @[stream_variables]
diff --git a/tests/parm/docn_in.IN b/tests/parm/docn_in.IN
@@ -8,4 +8,5 @@
   sst_constant_value = -1.0
   skip_restart_read = true
   import_data_fields = "none"
+  export_all = @[EXPORT_ALL]
 /
diff --git a/tests/parm/ufs.configure.coastal_datm_ocn_cice.IN b/tests/parm/ufs.configure.coastal_datm_ocn_cice.IN
@@ -0,0 +1,112 @@
+#############################################
+####  NEMS Run-Time Configuration File  #####
+#############################################
+
+# ESMF #
+logKindFlag:            ESMF_LOGKIND_MULTI
+globalResourceControl:  true
+
+# EARTH #
+EARTH_component_list: ATM OCN ICE MED
+EARTH_attributes::
+  Verbosity = 0
+::
+
+# MED #
+MED_model:                      @[med_model]
+MED_petlist_bounds:             @[med_petlist_bounds]
+MED_omp_num_threads:            @[med_omp_num_threads]
+MED_attributes::
+  ATM_model = @[atm_model]
+  OCN_model = @[ocn_model]
+  ICE_model = @[ice_model]
+  history_n = 1
+  history_option = nhours
+  history_ymd = -999
+  coupling_mode = @[CPLMODE]
+::
+
+# ATM #
+ATM_model:                      @[atm_model]
+ATM_petlist_bounds:             @[atm_petlist_bounds]
+ATM_omp_num_threads:            @[atm_omp_num_threads]
+ATM_attributes::
+  Verbosity = 0
+  DumpFields = false
+  ProfileMemory = false
+  OverwriteSlice = true
+::
+
+# OCN #
+OCN_model:                      @[ocn_model]
+OCN_petlist_bounds:             @[ocn_petlist_bounds]
+OCN_omp_num_threads:            @[ocn_omp_num_threads]
+OCN_attributes::
+  Verbosity = 0
+  DumpFields = false
+  ProfileMemory = false
+  OverwriteSlice = true
+  meshloc = @[meshloc]
+  CouplingConfig = @[coupling_config]
+  write_restart_at_endofrun = .true.
+::
+
+# ICE #
+ICE_model:                      @[ice_model]
+ICE_petlist_bounds:             @[ice_petlist_bounds]
+ICE_omp_num_threads:            @[ice_omp_num_threads]
+ICE_attributes::
+  Verbosity = 0
+  DumpFields = false
+  ProfileMemory = false
+  OverwriteSlice = true
+  mesh_ice = @[mesh_ice]
+  eps_imesh = 5.0e-1
+::
+
+# Run Sequence # 
+runSeq::
+@@[coupling_interval_slow_sec]
+  MED med_phases_prep_atm
+  MED med_phases_prep_ocn_accum
+  MED med_phases_prep_ocn_avg
+  MED med_phases_prep_ice
+  MED -> ATM :remapMethod=redist
+  MED -> OCN :remapMethod=redist
+  MED -> ICE :remapMethod=redist
+  ATM
+  OCN
+  ICE
+  ATM -> MED :remapMethod=redist
+  OCN -> MED :remapMethod=redist
+  ICE -> MED :remapMethod=redist
+  MED med_phases_post_atm
+  MED med_phases_post_ocn
+  MED med_phases_post_ice
+  MED med_phases_history_write
+  MED med_phases_restart_write
+@
+::
+
+ALLCOMP_attributes::
+  ScalarFieldCount = 3
+  ScalarFieldIdxGridNX = 1
+  ScalarFieldIdxGridNY = 2
+  ScalarFieldIdxNextSwCday = 3
+  ScalarFieldName = cpl_scalars
+  start_type = @[RUNTYPE] 
+  restart_dir = RESTART/
+  case_name = ufs.cpld
+  restart_n = @[RESTART_N]
+  restart_option = nhours
+  restart_ymd = -999
+  orb_eccen = 1.e36
+  orb_iyear = 2000
+  orb_iyear_align = 2000
+  orb_mode = fixed_year
+  orb_mvelp = 1.e36
+  orb_obliq = 1.e36
+  stop_n = @[FHMAX]
+  stop_option = nhours
+  stop_ymd = -999
+::
diff --git a/tests/parm/ufs.configure.coastal_datm_ocn_wav.IN b/tests/parm/ufs.configure.coastal_datm_ocn_wav.IN
@@ -58,7 +58,7 @@ WAV_attributes::
   Verbosity = 0
   DumpFields = false
   ProfileMemory = false
-  mesh_wav = mesh.shinnecock.cdf5.nc
+  mesh_wav = @[wav_mesh] 
   multigrid = false
   user_histname = 'false'
   use_historync = 'true'

diff --git a/tests/rt_coastal.conf b/tests/rt_coastal.conf
@@ -24,17 +24,19 @@
 COMPILE | atm2adc | intel | -DAPP=CSTLA -DADCIRC_CONFIG=PADCIRC -DCOUPLED=ON | | fv3 |
 RUN | coastal_ike_shinnecock_atm2adc | | baseline |
 
+### CICE tests ###
+COMPILE | atm2ocn2cice | intel | -DAPP=CSTLC -DCICE_IO=NetCDF | | fv3 |
+RUN | coastal_bering_sea_atm2ocn2cice | | baseline | 
+
 ### FVCOM tests ###
 COMPILE | atm2fvc | intel | -DAPP=CSTLF -DCOORDINATE_TYPE=SPHERICAL -DWET_DRY=ON | | fv3 |
 RUN | coastal_scituateharbor_atm2fvc | | baseline |
 
 ### SCHISM tests ###
-#COMPILE | atm2sch | intel | -DAPP=CSTLS -DUSE_ATMOS=ON -DNO_PARMETIS=OFF -DOLDIO=ON -DBUILD_TOOLS=ON | | fv3 |
-COMPILE | atm2sch | intel | -DAPP=CSTLS -DUSE_ATMOS=ON -DNO_PARMETIS=OFF -DOLDIO=ON | | fv3 |
-RUN | coastal_ike_shinnecock_atm2sch | | baseline |
+COMPILE | atm2sch | intel | -DAPP=CSTLS -DUSE_ATMOS=ON -DNO_PARMETIS=OFF -DOLDIO=ON -DBUILD_TOOLS=ON | | fv3 |
+RUN | coastal_sandy_duck_atm2sch | | baseline |
 
-#COMPILE | atm2sch2ww3 | intel | -DAPP=CSTLSW -DUSE_ATMOS=ON -DUSE_WW3=ON -DNO_PARMETIS=OFF -DOLDIO=ON -DPDLIB=ON -DBUILD_TOOLS=ON | | fv3 |
-COMPILE | atm2sch2ww3 | intel | -DAPP=CSTLSW -DUSE_ATMOS=ON -DUSE_WW3=ON -DNO_PARMETIS=OFF -DOLDIO=ON -DPDLIB=ON | | fv3 |
+COMPILE | atm2sch2ww3 | intel | -DAPP=CSTLSW -DUSE_ATMOS=ON -DUSE_WW3=ON -DNO_PARMETIS=OFF -DOLDIO=ON -DPDLIB=ON -DBUILD_TOOLS=ON | | fv3 |
 RUN | coastal_ike_shinnecock_atm2sch2ww3 | | baseline |
 
 ### ROMS tests ###
@@ -45,12 +47,20 @@ RUN | coastal_irene_atm2roms | | baseline |
 COMPILE | atm2ww3 | intel | -DAPP=CSTLW -DPDLIB=ON -DBUILD_TOOLS=ON | | fv3 |
 RUN | coastal_ike_shinnecock_ww3     | | baseline |
 RUN | coastal_ike_shinnecock_atm2ww3 | | baseline |
+RUN | coastal_sandy_duck_atm2ocn2ww3 | | baseline |
 
 ### GNU Tests ###
 ### SCHISM tests ###
+COMPILE | atm2sch | gnu | -DAPP=CSTLS -DUSE_ATMOS=ON -DNO_PARMETIS=OFF -DOLDIO=ON -DBUILD_TOOLS=ON | | fv3 |
+RUN | coastal_sandy_duck_atm2sch | | baseline |
+
 COMPILE | atm2sch2ww3 | gnu | -DAPP=CSTLSW -DUSE_ATMOS=ON -DUSE_WW3=ON -DNO_PARMETIS=OFF -DOLDIO=ON -DPDLIB=ON -DBUILD_TOOLS=ON | - frontera | fv3 |
 RUN | coastal_ike_shinnecock_atm2sch2ww3 | - frontera | baseline |
 
+### WW3 tests ###
+COMPILE | atm2ww3 | gnu | -DAPP=CSTLW -DPDLIB=ON -DBUILD_TOOLS=ON | | fv3 |
+RUN | coastal_sandy_duck_atm2ocn2ww3 | | baseline |
+
 ### ROMS tests ###
 COMPILE | atm2roms | gnu | -DAPP=CSTLR -DMY_CPP_FLAGS=BULK_FLUXES | - frontera | fv3 |
 RUN | coastal_irene_atm2roms | - frontera | baseline |