Skip to content

Conversation

@will-moore
Copy link
Member

@will-moore will-moore commented Sep 18, 2025

This reverts commit 9fea245.

To test:

  • with a bioformats2raw image (2 out of 3 images have labels):
$ omero zarr import https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0079A/idr0079_images.zarr --labels --target 23619
  • regular image
$ omero zarr import https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0062A/6001240.zarr --labels --target 23619

This PR converts labels into masks. This is not a similar "import" than the one we have for images
The current tooling in OMERO will need to be reviewed in order to support a true "import" of labels
i.e. only reference to it

@snoopycrimecop
Copy link
Member

snoopycrimecop commented Sep 27, 2025

Conflicting PR. Removed from build OMERO-plugins-push#543. See the console output for more details.
Possible conflicts:

--conflicts Conflict resolved in build OMERO-plugins-push#576. See the console output for more details.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants