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@dmalzl dmalzl commented Aug 5, 2025

Hi,

I recently tried to plot a couple of interchromosomal regions but didn't want to write my own code. Conveniently cooler has a show subcommand that had just the right functionality for my needs except it only allowed me to use the 'weight' column. I know it is standard behaviour to save balancing weight in the weight column but I ran multiple balancing algorithms and all put in a column that holds the algorithms name so just using 'weights' did not cut it. I therefore added a CLI option which let's the user select the weight column and thought this may be a useful addition to the cooler CLI hence the pull request.

Thanks for the nice framework and all the best,
Daniel

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