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@opencobra

openCOBRA

Community driven constraint-based reconstruction, analysis and modelling of biology

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  1. cobrapy cobrapy Public

    COBRApy is a package for constraint-based modeling of metabolic networks.

    Python 514 227

  2. cobratoolbox cobratoolbox Public

    The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

    MATLAB 263 331

  3. COBRA.jl COBRA.jl Public

    High-level, high-performance, constraint-based reconstruction and analysis in Julia

    Julia 62 32

  4. MASS-Toolbox MASS-Toolbox Public

    Mass Action Stoichiometric Simulation (MASS) Toolbox

    Mathematica 12 8

  5. MATLAB.devTools MATLAB.devTools Public

    MATLAB Development Tools

    MATLAB 28 35

  6. memote memote Public

    memote – the genome-scale metabolic model test suite

    HTML 139 31

Repositories

Showing 10 of 36 repositories
  • cobratoolbox Public

    The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

    opencobra/cobratoolbox’s past year of commit activity
    MATLAB 263 331 61 (1 issue needs help) 1 Updated Sep 9, 2025
  • Medusa Public

    Analysis of ensembles of metabolic network reconstructions

    opencobra/Medusa’s past year of commit activity
    Python 21 MIT 9 28 23 Updated Sep 2, 2025
  • swiglpk Public

    Simple swig bindings for the GNU Linear Programming Kit

    opencobra/swiglpk’s past year of commit activity
    Python 28 GPL-3.0 10 2 5 Updated Sep 1, 2025
  • reconstructor Public

    Open source tool for biochemical network reconstruction

    opencobra/reconstructor’s past year of commit activity
    Java 1 GPL-3.0 2 0 0 Updated Aug 31, 2025
  • cobrapy Public

    COBRApy is a package for constraint-based modeling of metabolic networks.

    opencobra/cobrapy’s past year of commit activity
    Python 514 GPL-2.0 227 78 (4 issues need help) 23 Updated Aug 28, 2025
  • COBRA.tutorials Public

    Repository of tutorials for The COBRA Toolbox

    opencobra/COBRA.tutorials’s past year of commit activity
    MATLAB 23 55 3 0 Updated Aug 22, 2025
  • memote Public

    memote – the genome-scale metabolic model test suite

    opencobra/memote’s past year of commit activity
    HTML 139 Apache-2.0 31 131 2 Updated Aug 14, 2025
  • jeweler Public

    Test and grade genome-scale metabolic models (GEMs).

    opencobra/jeweler’s past year of commit activity
    Nextflow 1 Apache-2.0 0 0 0 Updated Aug 14, 2025
  • COBRA.papers Public

    Repository for scripts related to reproducing the results of an individual publication

    opencobra/COBRA.papers’s past year of commit activity
    MATLAB 9 14 1 1 Updated Jul 21, 2025
  • sphinx_cobra_theme Public Forked from martamatos/sphinx_cobra_theme
    opencobra/sphinx_cobra_theme’s past year of commit activity
    HTML 0 MIT 3 0 0 Updated Jul 8, 2025
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