Repositories list

• DifFracTion

  Public
  Systematic normalization and differential interaction identification for cross-sample comparison of Hi-C datasets

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Apr 1, 2026Apr 1, 2026

• PLayer-FL

  Public
  This repository contains the official implementation for the paper "PLayer-FL: A principled approach to personalized layer-wise cross-silo Federated Learning".

  Python

  •0•0•0•0•Updated Mar 17, 2026Mar 17, 2026

• PanMixer

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 2, 2026Mar 2, 2026

• Atlas2AoU

  Public
  Python

  •0•0•0•0•Updated Feb 18, 2026Feb 18, 2026

• pCSAC

  Public
  C++

  •1•4•3•0•Updated Sep 26, 2025Sep 26, 2025

• NHP_Alzheimers_Proteomics

  Public
  Scripts for the NHP_Alzheimer’s_Proteomics paper

  R

  •0•0•0•0•Updated Sep 18, 2025Sep 18, 2025

• goldfleck-pipeline

  Public
  Multi species genome alignment + read to species identification

  Shell

  •0•0•0•0•Updated Aug 30, 2025Aug 30, 2025

• prs-privacy

  Public
  Go

  •

  MIT License

  •0•1•0•0•Updated Aug 8, 2025Aug 8, 2025

• scattr

  Public
  A tool for estimating the copy number of large tandem repeats

  Rust

  •

  Apache License 2.0

  •0•7•8•12•Updated Jul 1, 2025Jul 1, 2025

• otcost_fl

  Public
  Python

  •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

• phenotyping-gwas-eval

  Public
  Python

  •0•0•0•0•Updated Jun 1, 2025Jun 1, 2025

• pC-SAC_vs_DeepLearning-benchmark

  Public
  Python

  •0•0•0•0•Updated May 16, 2025May 16, 2025

• keep

  Public
  Python

  •0•1•0•0•Updated May 5, 2025May 5, 2025

• UKBBPhenotyping

  Public
  Shell

  •0•0•0•0•Updated May 1, 2025May 1, 2025

• pQuant

  Public
  Jupyter Notebook

  •

  MIT License

  •0•3•0•0•Updated Feb 6, 2025Feb 6, 2025

• SQUiD

  Public
  Ultra-Secure Storage and Analysis of Genetic Data for the Advancement of Precision Medicine

  C++

  •

  GNU General Public License v3.0

  •1•5•0•0•Updated Dec 31, 2024Dec 31, 2024

• privateQTL

  Public
  Secure and Federated Quantitative Trait Loci Mapping with privateQTL

  C++

  •0•1•0•0•Updated Dec 2, 2024Dec 2, 2024

• prs-privacy-data

  Public
  0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• HElibPublicKeySwitch

  Public
  HElib with Public Key-Switch

  C++

  •

  Other

  •763•0•0•0•Updated Oct 18, 2024Oct 18, 2024

• padicBGV

  Public
  p-adic arithmetic for BGV

  C++

  •

  MIT License

  •0•1•0•0•Updated Aug 27, 2024Aug 27, 2024

• metaCRISPRs

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Aug 19, 2024Aug 19, 2024

• scPrivacy

  Public
  Analysis and method implementation for exploring private information leakage from single-cell RNA-seq count matrices

  Python

  •

  GNU General Public License v3.0

  •2•4•1•0•Updated Aug 15, 2024Aug 15, 2024

• PrecisionChain

  Public
  software to automate the set-up, insertion and querying of clinical and genetic data

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•5•0•0•Updated Jul 19, 2024Jul 19, 2024

• ot_cost

  Public
  Jupyter Notebook

  •1•1•0•0•Updated Jun 5, 2024Jun 5, 2024

• pcfbl

  Public
  implementation of privacy-preserving CBFL

  Python

  •1•5•0•0•Updated Jul 17, 2023Jul 17, 2023

• SampleJemDocWebsite

  Public
  Template for JemDoc personal website

  Python

  •0•0•0•0•Updated Feb 1, 2023Feb 1, 2023

• ldmat

  Public
  Jupyter Notebook

  •

  MIT License

  •2•6•2•1•Updated Nov 26, 2022Nov 26, 2022

• privateML

  Public
  C++

  •0•0•0•0•Updated Oct 17, 2022Oct 17, 2022