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    • mzPeak

      Public
      Rust
      42280Updated May 19, 2026May 19, 2026
    • ProForma

      Public
      HUPO-PSI Standardized peptidoform notation
      Rust
      52411Updated May 16, 2026May 16, 2026
    • mzTab-M

      Public
      Development of the mzTab-M standard data form
      Python
      Creative Commons Attribution 4.0 International
      66433Updated May 15, 2026May 15, 2026
    • mzQC

      Public
      Reporting and exchange format for mass spectrometry quality control data
      Dockerfile
      Creative Commons Attribution 4.0 International
      1433253Updated May 8, 2026May 8, 2026
    • A .NET implementation of mzPeak
      C#
      0000Updated May 8, 2026May 8, 2026
    • psi-mi-CV

      Public
      Molecular Interactions Controll Vocabulary
      Creative Commons Attribution 4.0 International
      44140Updated May 7, 2026May 7, 2026
    • mzpeakts

      Public
      A TypeScript implementation of mzPeak
      TypeScript
      0000Updated May 7, 2026May 7, 2026
    • mzIdentML

      Public
      Repository for mzIdentML and the corresponding examples
      HTML
      2427172Updated May 6, 2026May 6, 2026
    • mzPAF

      Public
      mzPAF Peak Annotation Format
      Jupyter Notebook
      Creative Commons Zero v1.0 Universal
      4300Updated May 5, 2026May 5, 2026
    • xlmod-CV

      Public
      Repo for the XLMOD ontology for chemical cross linkers
      XSLT
      Apache License 2.0
      3201Updated Apr 29, 2026Apr 29, 2026
    • psi-ms-CV

      Public
      HUPO-PSI mass spectrometry CV
      Python
      Other
      464162Updated Apr 24, 2026Apr 24, 2026
    • PSI-MOD ontology for modified and unmodified amino acid residues
      Python
      Creative Commons Attribution 4.0 International
      1716233Updated Apr 22, 2026Apr 22, 2026
    • Validation and curation tools for the PSI-MOD protein modification ontology. Focuses on structure validation using RDKit, cross-reference checking, and mass/for…
      Python
      Apache License 2.0
      0000Updated Apr 22, 2026Apr 22, 2026
    • Community-driven website of the AI-readiness working group. Feel free to contribute!
      TeX
      0000Updated Apr 21, 2026Apr 21, 2026
    • psi-tools

      Public
      Previous https://sourceforge.net/p/psidev/svn/HEAD/tree/psi/tools/ folder
      Java
      2210Updated Apr 13, 2026Apr 13, 2026
    • mzSpecLib

      Public
      mzSpecLib: A standard format to exchange/distribute spectral libraries
      Python
      Apache License 2.0
      143240Updated Mar 27, 2026Mar 27, 2026
    • A lightweight Vue 3 web application for browsing and searching the PSI-MOD controlled vocabulary of protein residue modifications with filtering, cross-referenc…
      Vue
      Apache License 2.0
      0101Updated Jan 16, 2026Jan 16, 2026
    • miTab

      Public
      Molecular Interactions Tab-delimited format
      0300Updated Jan 7, 2026Jan 7, 2026
    • usi

      Public
      Universal Spectrum Identifier for Mass Spectrometry
      Apache License 2.0
      3640Updated Sep 19, 2025Sep 19, 2025
    • Simple HTTP redirect page from hupo-psi.org to psidev.info
      HTML
      Creative Commons Zero v1.0 Universal
      0000Updated Jul 29, 2025Jul 29, 2025
    • A python reference implementation of the mzSpecLib spectral library format
      Python
      Apache License 2.0
      2610Updated Jul 11, 2025Jul 11, 2025
    • mzTab

      Public
      mzTab Reporting MS-based Proteomics and Metabolomics Results
      Java
      1946118Updated Apr 1, 2025Apr 1, 2025
    • Landing site for GitHub Pages
      Apache License 2.0
      0000Updated Sep 6, 2024Sep 6, 2024
    • mzML

      Public
      Repository for mzML and the corresponding examples
      Java
      163731Updated Apr 5, 2024Apr 5, 2024
    • MIAPE

      Public
      A repository of MIAPE documents and examples
      Apache License 2.0
      0200Updated Jan 16, 2024Jan 16, 2024
    • 0000Updated Jul 12, 2023Jul 12, 2023
    • ProXI: Schema definitions for the Proteomics eXpression Interface
      JavaScript
      34241Updated Apr 17, 2023Apr 17, 2023
    • mzidentml validator ui and command line tool
      Java
      Apache License 2.0
      00100Updated Oct 7, 2022Oct 7, 2022
    • PEFF

      Public
      Repository for the PSI Extended FASTA Format
      Apache License 2.0
      27130Updated Apr 5, 2021Apr 5, 2021
    • Effort to extend support for encoding glycopeptides in mxIdentML
      0100Updated Mar 28, 2021Mar 28, 2021
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