Repositories list

• psi-ms-CV

  Public
  HUPO-PSI mass spectrometry CV

  mass-spectrometryobofoundry

  Python

  •

  Other

  •38•28•4•0•Updated Nov 11, 2024Nov 11, 2024

• mzSpecLib

  Public
  mzSpecLib: A standard format to exchange/distribute spectral libraries

  standardsfile-formatproteomics+ 3mass-spectrometryhupo-psispectral-library

  Python

  •

  Apache License 2.0

  •14•24•5•0•Updated Nov 9, 2024Nov 9, 2024

• mzspeclib-py

  Public
  A python reference implementation of the mzSpecLib spectral library format

  Python

  •1•2•1•0•Updated Nov 1, 2024Nov 1, 2024

• psi-mi-CV

  Public
  Molecular Interactions Controll Vocabulary

  Creative Commons Attribution 4.0 International

  •4•4•13•0•Updated Oct 30, 2024Oct 30, 2024

• miTab

  Public
  Molecular Interactions Tab-delimited format

  0•4•0•0•Updated Oct 29, 2024Oct 29, 2024

• mzQC

  Public
  Reporting and exchange format for mass spectrometry quality control data

  quality-controlmass-spectrometrymetrics

  Dockerfile

  •

  Creative Commons Attribution 4.0 International

  •13•27•14•2•Updated Oct 25, 2024Oct 25, 2024

• mzPAF

  Public
  mzPAF Peak Annotation Format

  Python

  •

  Creative Commons Zero v1.0 Universal

  •2•2•0•1•Updated Oct 16, 2024Oct 16, 2024

• hupo-psi.github.io

  Public
  Landing site for GitHub Pages

  Apache License 2.0

  •0•0•0•0•Updated Sep 6, 2024Sep 6, 2024

• mzTab

  Public
  mzTab Reporting MS-based Proteomics and Metabolomics Results

  Java

  •17•39•33•5•Updated Sep 6, 2024Sep 6, 2024

• psi-tools

  Public
  Previous https://sourceforge.net/p/psidev/svn/HEAD/tree/psi/tools/ folder

  Java

  •2•2•1•0•Updated Aug 15, 2024Aug 15, 2024

• mzIdentML

  Public
  Repository for mzIdentML and the corresponding examples

  HTML

  •24•23•14•2•Updated Jun 25, 2024Jun 25, 2024

• xlmod-CV

  Public
  Repo for the XLMOD ontology for chemical cross linkers

  Python

  •

  Apache License 2.0

  •2•0•0•1•Updated May 9, 2024May 9, 2024

• mzML

  Public
  Repository for mzML and the corresponding examples

  Java

  •16•27•3•1•Updated Apr 5, 2024Apr 5, 2024

• ProForma

  Public
  HUPO-PSI Standardized peptidoform notation

  standardsproteomicsmass-spectrometry+ 1peptidoform

  3•15•6•1•Updated Feb 12, 2024Feb 12, 2024

• usi

  Public
  Universal Spectrum Identifier for Mass Spectrometry

  Apache License 2.0

  •3•6•4•0•Updated Jan 22, 2024Jan 22, 2024

• MIAPE

  Public
  A repository of MIAPE documents and examples

  Apache License 2.0

  •0•0•0•0•Updated Jan 16, 2024Jan 16, 2024

• psi-doc-proc

  Public
  0•0•0•0•Updated Jul 12, 2023Jul 12, 2023

• proxi-schemas

  Public
  ProXI: Schema definitions for the Proteomics eXpression Interface

  apiswaggerschemas+ 3proteomicsproteomics-dataproteomexchange

  JavaScript

  •3•3•24•1•Updated Apr 17, 2023Apr 17, 2023

• mzidentml-validator

  Public
  mzidentml validator ui and command line tool

  Java

  •

  Apache License 2.0

  •0•0•10•0•Updated Oct 7, 2022Oct 7, 2022

• psi-mod-CV

  Public
  Reactivated PSI-MOD ontology for molecular mass modifications

  obofoundry

  Python

  •

  Creative Commons Attribution 4.0 International

  •13•8•17•0•Updated Jun 13, 2022Jun 13, 2022

• PEFF

  Public
  Repository for the PSI Extended FASTA Format

  Apache License 2.0

  •2•7•12•0•Updated Apr 5, 2021Apr 5, 2021

• glycopeptides_in_mzidentml

  Public
  Effort to extend support for encoding glycopeptides in mxIdentML

  0•1•0•0•Updated Mar 28, 2021Mar 28, 2021

• miXML

  Public
  Molecular Interaction XML Format

  HTML

  •3•5•0•0•Updated Mar 1, 2021Mar 1, 2021

• gelml

  Public
  PSI standard for Gel experiments

  the

  HTML

  •3•2•1•1•Updated Dec 15, 2018Dec 15, 2018

• psidev-cvs-legacy

  Public
  psidev legacy works from sourceforge cvs

  HTML

  •1•0•1•0•Updated Oct 12, 2017Oct 12, 2017

• mzQuantML

  Public
  1•3•0•0•Updated Oct 12, 2015Oct 12, 2015