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    • Web GUI for ddharmon — upload data dictionaries, run the harmonization pipeline with live progress, review recommendations, export the review queue. Built on th…
      TypeScript
      0000Updated Jul 20, 2026Jul 20, 2026
    • ddharmon

      Public
      Biomedical Data Dictionary Harmonization Tool: cluster semantically equivalent questionnaire variables across studies and anchor each to a Common Data Element (…
      Python
      MIT License
      0102Updated Jul 17, 2026Jul 17, 2026
    • Map biomedical entities to KG nodes (entity linking and resolution)
      Python
      MIT License
      12131Updated Jul 16, 2026Jul 16, 2026
    • biomapper

      Public
      Python
      MIT License
      0000Updated Jul 10, 2026Jul 10, 2026
    • PortFlow

      Public
      A small toolkit for model portability. Includes conditional normalizing flows for fast imputation, transfer lasso for transfer learning of linear models, and Po…
      Python
      0000Updated Apr 7, 2026Apr 7, 2026
    • A framework for optimizing vector databases in biological/biomedical domains. Evaluates embedding models, quantization strategies, and index configurations for …
      Jupyter Notebook
      MIT License
      0000Updated Jan 13, 2026Jan 13, 2026
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