APL BRAIN

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92 repositories

ffn
Public
Flood-Filling Networks for instance segmentation in 3d volumes.
Python
•
Apache License 2.0
•101•0•0•0•Updated Nov 13, 2024Nov 13, 2024
pyreconstruct-download
Public
Tiny website + example code for downloading a subvolume for annotation in PyReconstruct
Python
•0•0•6•0•Updated Nov 12, 2024Nov 12, 2024
neuvue-app
Public
MICrONS Proofreading App
JavaScript
•
Apache License 2.0
•2•1•11•0•Updated Nov 6, 2024Nov 6, 2024
neuroglancer
Public
WebGL-based viewer for volumetric data
TypeScript
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Apache License 2.0
•298•1•0•1•Updated Nov 6, 2024Nov 6, 2024
neuVid
Public
Generates neuroscience videos from high-level descriptions using Blender.
Python
•
Other
•7•0•0•0•Updated Nov 5, 2024Nov 5, 2024
bossdb-collab-notebooks
Public
Collection of public notebooks for all projects on BossDB
Jupyter Notebook
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Apache License 2.0
•0•1•2•0•Updated Oct 29, 2024Oct 29, 2024
grand-cypher
Public
Implementation of the Cypher language for searching NetworkX graphs
networkx networks cypher grand python neo4j graph graph-database
Python
•
Apache License 2.0
•8•83•6•0•Updated Oct 18, 2024Oct 18, 2024
motifstudio
Public
motifs subgraph-isomorphism bossdb grand-graphs grandiso
Python
•
Apache License 2.0
•0•1•6•0•Updated Sep 3, 2024Sep 3, 2024
motifstudio-client
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Aug 21, 2024Aug 21, 2024
dotmotif
Public
A performant, powerful query framework to search for network motifs
neo4j networkx graph-database connectomics query-language connectome motif-discovery graph-matching motifs subgraph-isomorphism
Python
•
Apache License 2.0
•9•81•4•0•Updated Aug 21, 2024Aug 21, 2024
tamarind
Public
manage multiple ephemeral neo4j containers
docker database neo4j graph neo4j-database graph-database
Python
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Apache License 2.0
•1•5•0•0•Updated Aug 20, 2024Aug 20, 2024
grandiso-networkx
Public
Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")
network graphs network-analysis connectomics ullman subgraph-isomorphism network-biology bossdb vf2 grand-graphs
Python
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Apache License 2.0
•10•56•6•1•Updated Aug 16, 2024Aug 16, 2024
EMAnnotationSchemas
Public
Repository to hold schemas for annotations of volumetric imaging data focused on EM
Python
•
MIT License
•11•1•0•1•Updated Aug 15, 2024Aug 15, 2024
PyChunkedGraph
Public
Data backend for fast proofreading of cell segmentations in connectomics datasets
Python
•
Mozilla Public License 2.0
•10•0•0•0•Updated Jul 18, 2024Jul 18, 2024
bossdb_cookbook
Public
The BossDB Cookbook is a collection of introductory notebooks and examples for interfacing with the BossDB system.
Jupyter Notebook
•0•5•1•1•Updated Jul 16, 2024Jul 16, 2024
neuPrint-Build-Update
Public
Scripts to create files to build a neuPrint database
Python
•1•1•0•0•Updated Jul 11, 2024Jul 11, 2024
neuprint-python
Public
Python client utilties for interacting with the neuPrint connectome analysis service
Python
•
BSD 3-Clause "New" or "Revised" License
•15•0•0•0•Updated Jul 9, 2024Jul 9, 2024
npyjs
Public
Read numpy .npy files in JavaScript
nodejs numpy 3d jhuapl javascript npy npy-files
JavaScript
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Apache License 2.0
•21•78•8•3•Updated Jul 2, 2024Jul 2, 2024
grandlite
Public
A SQLite-like tool for querying graphs from the command-line using graph query languages in in-memory Python.
neo4j command-line graph sqlite graphs in-memory graph-database cypher opencypher graph-query
Python
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Apache License 2.0
•0•5•2•1•Updated Jun 12, 2024Jun 12, 2024
neuvue-manage
Public
Resources and documentation to create and manage proofreading tasks on NeuVue
Jupyter Notebook
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Apache License 2.0
•1•1•0•0•Updated Jun 7, 2024Jun 7, 2024
grand
Public
Your favorite Python graph libraries, scalable and interoperable. Graph databases in memory, and familiar graph APIs for cloud databases.
sql serverless graph graph-algorithms graphs neptune dynamodb networkx graph-theory graph-database
Python
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Apache License 2.0
•6•86•8•0•Updated Jun 4, 2024Jun 4, 2024
neuroglancer-segment-properties
Public
This application integrates with Neuroglancer via the CAVEclient library to manage neuroimaging data, allowing users to create, view, and manipulate segment properties in its 3D environment.
Python
•0•0•1•0•Updated May 10, 2024May 10, 2024
mEMbrain
Public
MATLAB
•3•0•0•0•Updated Apr 26, 2024Apr 26, 2024
neuPrintExplorer
Public
View connectomic data stored in neuPrint
JavaScript
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Other
•4•0•0•0•Updated Apr 17, 2024Apr 17, 2024
neuPrintExplorerPlugins
Public
Query and View plugins used by the neuPrintExplorer site
JavaScript
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Other
•1•0•0•0•Updated Apr 12, 2024Apr 12, 2024
neuPrintHTTP
Public
Implements connectomics REST interface
Go
•2•0•0•0•Updated Apr 12, 2024Apr 12, 2024
neuprint-cm
Public
Dockerfile
•1•0•0•0•Updated Apr 1, 2024Apr 1, 2024
neurodatarehack2023
Public
APL Team's project for NeurodataRehack 2023 event hosted by NWB
Jupyter Notebook
•0•0•0•0•Updated Feb 19, 2024Feb 19, 2024
BENCHMARK-Metadata
Public
Metadata specification and upload instructions for BossDB images, experiments, and annotations
1•2•5•2•Updated Jan 29, 2024Jan 29, 2024
neuvue-queue
Public
TypeScript
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Apache License 2.0
•0•1•4•0•Updated Jan 22, 2024Jan 22, 2024