Repositories list

• dubicube

  Public
  An R package to explore calculation, interpretation and visualisation of uncertainty related to indicators based on biodiversity data cubes.

  runcertainty-quantificationrpackage+ 3uncertainty-visualisationbiodiversity-indicatorsdata-cubes

  R

  •

  Other

  •0•0•3•1•Updated Mar 12, 2025Mar 12, 2025

• documentation

  Public
  B-Cubed documentation website

  JavaScript

  •

  Creative Commons Attribution 4.0 International

  •2•0•14•3•Updated Mar 12, 2025Mar 12, 2025

• comp-unstructured-data

  Public
  Scripts to explore the conditions that determine the reliability of models, trends and status by comparing aggregated cubes with structured monitoring schemes

  rrstatsstructured-data+ 3data-qualityunstructured-datadata-cubes

  R

  •

  MIT License

  •0•1•0•0•Updated Mar 11, 2025Mar 11, 2025

• b3doc

  Public
  R

  •

  Other

  •1•0•1•1•Updated Mar 11, 2025Mar 11, 2025

• b3gbi

  Public
  B-Cubed General Biodiversity Indicators

  biodiversity-indicatorsdata-cubes

  R

  •

  Other

  •2•5•3•2•Updated Mar 11, 2025Mar 11, 2025

• b3gbi-gui

  Public
  R

  •0•0•5•0•Updated Mar 5, 2025Mar 5, 2025

• b-cubed-eu.r-universe.dev

  Public
  0•0•0•0•Updated Feb 27, 2025Feb 27, 2025

• impIndicator

  Public
  Compute impact indicators of invasive alien species

  rimpactinvasive-species+ 1biodiversity-indicators

  R

  •

  Other

  •0•0•12•1•Updated Feb 26, 2025Feb 26, 2025

• pdindicatoR

  Public
  Repository for the phylogenetic diversity indicator workflow as part of the B3 project.

  rconservationdatacube+ 3phylogenetic-diversityindicatorbiodiversity

  R

  •

  Other

  •2•0•23•1•Updated Feb 25, 2025Feb 25, 2025

• indicator-uncertainty

  Public
  Scripts to explore calculation, interpretation and visualisation of uncertainty related to indicators based on biodiversity data cubes

  rrstatsuncertainty-quantification+ 3uncertainty-visualisationbiodiversity-indicatorsdata-cubes

  R

  •

  MIT License

  •1•1•1•0•Updated Feb 19, 2025Feb 19, 2025

• euroraccoon

  Public
  Generalized Additive Models (GAMs) for raccoon in Europe

  biological-data-analysisbiodiversityraccoon+ 1biodiversity-data

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• biospace25-demo

  Public
  This repository contains the materials related to the B-cubed demo session presented on the BioSpace 2025 conference.

  Jupyter Notebook

  •

  MIT License

  •1•1•0•0•Updated Feb 13, 2025Feb 13, 2025

• gcube

  Public
  Simulation framework for biodiversity data cubes

  rsimulationsr-package+ 2biodiversity-informaticsdata-cubes

  R

  •

  Other

  •2•6•9•0•Updated Feb 12, 2025Feb 12, 2025

• virtual-suitability-cube

  Public
  Scripts to build suitability data cubes and assess the impact of sampling bias when measuring ecological niche.

  R

  •

  MIT License

  •1•1•0•0•Updated Feb 10, 2025Feb 10, 2025

• test-repo

  Public
  This repo is made to illustrate how a new repository can be set up.

  MIT License

  •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

• b-cubed-workshops

  Public
  R

  •0•1•0•0•Updated Nov 13, 2024Nov 13, 2024

• integrate-indicator-software

  Public
  Scripts to explore the streamlining and integration of software (with focus on R packages) related to the calculation of indicators based on biodiversity data cubes

  rr-packagesbiodiversity-indicators+ 3data-cubessoftware-integrationsoftware-streamlining

  R

  •

  MIT License

  •0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

• fowlplay

  Public
  A notebook to explore the value of sex data buried in the Global Biodiversity Information Facility for ducks

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Jul 22, 2024Jul 22, 2024

• project9

  Public
  Species Occurrence Cube Portability @ B-Cubed Hackathon 2024 - Hacking Biodiversity Data Cubes for Policy.

  Python

  •0•1•0•0•Updated Jul 11, 2024Jul 11, 2024

• hackathon-projects-2024

  Public
  This space is dedicated to hosting and showcasing all the projects submitted for the B-Cubed Hackathon 2024 - Hacking Biodiversity Data Cubes for Policy

  hackathonbiodiversity-datadatacubes

  Jupyter Notebook

  •

  MIT License

  •2•6•0•0•Updated Jun 19, 2024Jun 19, 2024

• hackathon-project-7

  Public
  This space is dedicated to hosting "Project 7 - Interoperable eLTER Standard Observation variables for Biosphere" as part of the B-Cubed Hackathon 2024 - Hacking Biodiversity Data Cubes for Policy.

  hackathonfairbiodiversity-data+ 1datacubes

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated May 21, 2024May 21, 2024