Common Workflow Language Lab

All

35 repositories

wdl-cwl-translator
Public
A translator from WDL to CWL v1.2
wdl cwl commonwl
Common Workflow Language
•
Apache License 2.0
•8•26•18•4•Updated Nov 1, 2024Nov 1, 2024
galaxy
Public
Fork of Galaxy (http://galaxyproject.org/) attempting to implement the CWL spec.
bh2019europe biohackeu20
Python
•
Other
•1k•10•44•0•Updated Oct 27, 2024Oct 27, 2024
cwl-d-auto
Public
Autogenerated classes for reading and writing CWL objects using the D language
parser dlang cwl commonwl
Common Workflow Language
•
Apache License 2.0
•0•3•0•0•Updated Oct 25, 2024Oct 25, 2024
upload-conformance-badges
Public
Action for uploading CWL conformance badges
common-workflow-language cwl commonwl
Apache License 2.0
•0•0•0•0•Updated Jun 25, 2024Jun 25, 2024
cwl-cpp-auto
Public
C++
•
Apache License 2.0
•1•2•1•0•Updated May 21, 2024May 21, 2024
cwl-ts-auto
Public
Autogenerated TypeScript bindings for CWL
TypeScript
•
Apache License 2.0
•4•6•6•0•Updated May 17, 2024May 17, 2024
2020-covid-19-bh
Public
Coordinating the CWL workflow related to the 2020 COVID-19 BioHackathon
Common Workflow Language
•
Apache License 2.0
•3•2•3•0•Updated Apr 17, 2024Apr 17, 2024
reana-demo-bsm-search
Public
REANA example - BSM search
Python
•
MIT License
•30•0•0•0•Updated Apr 6, 2024Apr 6, 2024
run-conformance-tests
Public
Action for running CWL conformance tests
common-workflow-language cwl commonwl
Apache License 2.0
•0•0•0•0•Updated Apr 6, 2024Apr 6, 2024
run-tests
Public
Action for running tests for CWL workflows
common-workflow-language cwl commonwl testing
Apache License 2.0
•0•1•0•0•Updated Mar 29, 2024Mar 29, 2024
cwl-ex
Public
CWL experimental grammar
JavaScript
•0•11•3•12•Updated Mar 2, 2023Mar 2, 2023
ipython2cwl
Public
IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.
docker jupyter jupyter-notebook common-workflow-language cwl
Python
•
Apache License 2.0
•5•15•4•4•Updated Nov 3, 2022Nov 3, 2022
schema-salad-ts-auto
Public
Autogenerated TypeScript bindings for Schema SALAD documents
TypeScript
•
Apache License 2.0
•0•0•0•0•Updated Oct 5, 2022Oct 5, 2022
CWLDotNet
Public
C#
•
Apache License 2.0
•0•2•1•0•Updated Jun 28, 2022Jun 28, 2022
cwl-language-server
Public
A Language Server for CWL
language-server common-workflow-language cwl commonwl
Python
•
Apache License 2.0
•2•3•2•1•Updated Jun 3, 2022Jun 3, 2022
CW22_CWL_Novice_Exercises
Public template
CWL Novice Exercises for the Collaborations Workshop 2022
HTML
•
Apache License 2.0
•1•1•0•0•Updated Apr 5, 2022Apr 5, 2022
cwl-novice-tutorial-data
Public template
Apache License 2.0
•1•1•0•0•Updated Mar 16, 2022Mar 16, 2022
cwl-argo-misc
Public
Examples of CWL descriptions converted to Argo
Apache License 2.0
•0•1•1•0•Updated Jan 10, 2022Jan 10, 2022
cwl-intermediate-tutorial
Public
HTML
•
Other
•3•2•3•1•Updated Dec 3, 2021Dec 3, 2021
wdl2cwl
Public archive
[Experimental] Workflow Definition Language (WDL) to CWL
wdl cwl commonwl wdl-workflow
Python
•
Apache License 2.0
•4•28•2•0•Updated Nov 17, 2021Nov 17, 2021
.github
Public
Apache License 2.0
•0•0•0•0•Updated Nov 3, 2021Nov 3, 2021
cwl_rna_seq
Public
A very basic CWL RNA-Seq workflow using Kallisto
Common Workflow Language
•
MIT License
•1•0•0•0•Updated Oct 1, 2021Oct 1, 2021
cwl-novice-tutorial
Public archive
Placeholder repo for redirects to https://github.com/carpentries-incubator/cwl-novice-tutorial
0•0•0•0•Updated Apr 26, 2021Apr 26, 2021
cwl-advanced-training
Public
Common Workflow Language
•0•1•0•0•Updated Mar 3, 2021Mar 3, 2021
cwl2script
Public
Compile CWL workflow to shell script
Python
•4•10•1•0•Updated Oct 23, 2020Oct 23, 2020
2020-works-workshop-mpi-cwl
Public
TeX
•0•0•0•0•Updated Oct 20, 2020Oct 20, 2020
avro
Public archive
Mirror of Apache Avro
Java
•
Apache License 2.0
•1.6k•0•0•1•Updated Aug 11, 2020Aug 11, 2020
make2cwl
Public
Sketch of a GNU Make to CWL converter
Apache License 2.0
•0•0•2•0•Updated Jul 2, 2020Jul 2, 2020
python-cwlgen
Public archive
Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
Python
•
MIT License
•13•29•0•0•Updated Jun 9, 2020Jun 9, 2020
lwcwl
Public archive
Lightweight CWL
Python
•
Apache License 2.0
•0•0•0•0•Updated Apr 28, 2020Apr 28, 2020