ga4gh repositories

168 repositories

gkm-starter-kit
Public
A single community-facing entry point that helps someone understand and adopt GKS in practice.
Python
•
Creative Commons Zero v1.0 Universal
•0•2•5•0•Updated Sep 21, 2026Sep 21, 2026
gkm-core
Public
Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)
Python
•
Apache License 2.0
•0•3•9•2•Updated Sep 21, 2026Sep 21, 2026
GA4GH-RegBot
Public
Python
•
MIT License
•10•6•0•10•Updated Sep 21, 2026Sep 21, 2026
quality-control-wgs
Public
GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations
Jupyter Notebook
•
Apache License 2.0
•7•26•4•3•Updated Sep 20, 2026Sep 20, 2026
va-spec-python
Public
GA4GH Variation Annotation Python Implementation
bioinformatics genomics ga4gh
bioinformatics genomics ga4gh
Python
•
Apache License 2.0
•1•2•4•0•Updated Sep 18, 2026Sep 18, 2026
tool-registry-service-schemas
Public
APIs for discovering genomics tools, their metadata and their containers
api workflow tool
api workflow tool wdl ga4gh cwl
Shell
•
Apache License 2.0
•18•35•28•1•Updated Sep 18, 2026Sep 18, 2026
analytics-dashboard-ui
Public
The UI for the embedded analytics dashboard on GA4GH metrics
Python
•
Apache License 2.0
•0•0•4•2•Updated Sep 18, 2026Sep 18, 2026
cat-vrs
Public
A terminology and data model for describing categorical variation concepts.
Makefile
•
Apache License 2.0
•7•9•34•2•Updated Sep 18, 2026Sep 18, 2026
vrs
Public
Extensible specification for representing and uniquely identifying biological sequence variation
bioinformatics genomics variation
bioinformatics genomics variation
Jupyter Notebook
•
Apache License 2.0
•43•98•35•1•Updated Sep 18, 2026Sep 18, 2026
va-spec
Public
An information model for representing variant annotations.
Jupyter Notebook
•
Apache License 2.0
•7•28•120•1•Updated Sep 18, 2026Sep 18, 2026
w3id.org
Public
Forwarding links and rewrite rules for w3id.org
HTML
•2k•3•0•1•Updated Sep 18, 2026Sep 18, 2026
gkm-metaschema
Public
Tools and scripts for parsing the GKS standards metaschemas
Python
•
Apache License 2.0
•1•0•15•9•Updated Sep 17, 2026Sep 17, 2026
ga4gh-service-info
Public
GA4GH service-info specification.
Apache License 2.0
•9•9•16•3•Updated Sep 16, 2026Sep 16, 2026
data-security
Public
This is the repository for the GA4GH Data Security Work Stream, containing AAI and DSIP.
data-security workstream
data-security workstream
Python
•16•25•13•4•Updated Sep 14, 2026Sep 14, 2026
ga4gh_workflow_clinic_gsoc_2026
Public
GA4GH Workflow Clinic
snakemake nextflow workflows
snakemake nextflow workflows
Python
•
Apache License 2.0
•1•1•3•3•Updated Sep 14, 2026Sep 14, 2026
refcloud-ui
Public
TypeScript
•0•0•0•15•Updated Sep 13, 2026Sep 13, 2026
data-repository-service-schemas
Public
A repository for the schemas used for the Data Repository Service.
Apache License 2.0
•56•64•74•27•Updated Sep 12, 2026Sep 12, 2026
task-execution-schemas
Public
Apache License 2.0
•32•96•46•8•Updated Sep 12, 2026Sep 12, 2026
analytics-dashboard-api
Public
Embedded analytics dashboard on GA4GH metrics
Jupyter Notebook
•0•4•6•9•Updated Sep 8, 2026Sep 8, 2026
passport-playground-compute
Public
research environment for GA4GH Passport Playground
ga4gh-passport trusted-research-environment
ga4gh-passport trusted-research-environment
JavaScript
•0•0•0•6•Updated Sep 7, 2026Sep 7, 2026
phenopacket-schema
Public
Repository for the GA4GH phenopacket schema
schema protobuf ga4gh
schema protobuf ga4gh phenotypes monarchinitiative phenopackets ehr-phenotyping
Java
•
BSD 3-Clause "New" or "Revised" License
•34•101•61•11•Updated Sep 1, 2026Sep 1, 2026
cat-vrs-python
Public
GA4GH Categorical Variation Representation Python Implementation
bioinformatics genomics ga4gh
bioinformatics genomics ga4gh
Python
•
Apache License 2.0
•5•2•3•0•Updated Sep 1, 2026Sep 1, 2026
vrs-python
Public
GA4GH Variation Representation Python Implementation
bioinformatics genomics ga4gh
bioinformatics genomics ga4gh
Python
•
Apache License 2.0
•43•63•68•5•Updated Sep 1, 2026Sep 1, 2026
pdap-reviews
Public
Reviews collated from reviewing groups for PDAP
0•0•0•0•Updated Aug 28, 2026Aug 28, 2026
TASC
Public
TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used together conveniently.
interoperability harmonisation technical-alignment
interoperability harmonisation technical-alignment
9•12•29•6•Updated Aug 28, 2026Aug 28, 2026
ga4gh-doi
Public
Apache License 2.0
•0•0•2•1•Updated Aug 27, 2026Aug 27, 2026
pedigree_family_history_terminology
Public
Java
•
Apache License 2.0
•6•6•14•2•Updated Aug 26, 2026Aug 26, 2026
pedigree
Public
Repository for the family history/pedigree project
ga4gh pedigree
ga4gh pedigree
3•13•17•2•Updated Aug 26, 2026Aug 26, 2026
gif-project-ai-agents
Public
Researcher Agents Demonstration Using GA4GH APIs
Apache License 2.0
•0•0•1•0•Updated Aug 25, 2026Aug 25, 2026
trustworthy_federated_ai
Public
GA4GH Trustworthy Federated AI
Python
•
Apache License 2.0
•0•1•0•0•Updated Aug 24, 2026Aug 24, 2026

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Global Alliance for Genomics and Health

All

168 repositories

gkm-starter-kit

gkm-core

GA4GH-RegBot

quality-control-wgs

va-spec-python

tool-registry-service-schemas

analytics-dashboard-ui

cat-vrs

vrs

va-spec

w3id.org

gkm-metaschema

ga4gh-service-info

data-security

ga4gh_workflow_clinic_gsoc_2026

refcloud-ui

data-repository-service-schemas

task-execution-schemas

analytics-dashboard-api

passport-playground-compute

phenopacket-schema

cat-vrs-python

vrs-python

pdap-reviews

TASC

ga4gh-doi

pedigree_family_history_terminology

pedigree

gif-project-ai-agents

trustworthy_federated_ai

Repositories list

168 repositories