Repositories list

• civic-v2

  Public
  CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer

  cancervariantscancer-genomics+ 3

  cancervariantscancer-genomicsbiocurationnci-itcrvariant-curation

  TypeScript

  •

  MIT License

  •66 forks•3232 stars•8282 issues•1111 pull requests•Updated Apr 10, 2026Apr 10, 2026

• pVACtools

  Public
  cancersequencingvariants+ 5

  cancersequencingvariantsimmunotherapyimmunogenomicsfusionsneoantigensantigens

  Python

  •

  BSD 3-Clause Clear License

  •7777 forks•174174 stars•9090 issues•88 pull requests•Updated Apr 10, 2026Apr 10, 2026

• civic-mcp-server

  Public
  JavaScript

  •

  Other

  •11 fork•11 star•00 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• civicpy

  Public
  A python interface for the CIViC db application

  civic

  civic

  Python

  •

  MIT License

  •88 forks•1212 stars•2828 issues•1414 pull requests•Updated Apr 8, 2026Apr 8, 2026

• rnabio.org

  Public
  website for the rnaseq course

  SCSS

  •

  MIT License

  •4444 forks•118118 stars•1919 issues•66 pull requests•Updated Apr 8, 2026Apr 8, 2026

• pmbio.org

  Public
  Website for the precision medicine workshop

  SCSS

  •

  MIT License

  •2222 forks•4848 stars•1313 issues•33 pull requests•Updated Apr 8, 2026Apr 8, 2026

• genviz.org

  Public
  Genomic data interpretation and visualization Workshop

  SCSS

  •

  MIT License

  •44 forks•2222 stars•1414 issues•33 pull requests•Updated Apr 8, 2026Apr 8, 2026

• civic-docs

  Public
  Source code for the civicdb.org docs

  civic

  civic

  Creative Commons Zero v1.0 Universal

  •99 forks•55 stars•2222 issues•33 pull requests•Updated Apr 1, 2026Apr 1, 2026

• pVACtools_Intro_Course

  Public
  Getting started with pVACtools - pVACseq, pVACbind and pVACview

  CSS

  •

  Creative Commons Attribution 4.0 International

  •22 forks•00 stars•00 issues•00 pull requests•Updated Apr 1, 2026Apr 1, 2026

• TL-MHC

  Public
  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 16, 2026Mar 16, 2026

• docker-pvactools

  Public
  Python

  •

  Other

  •88 forks•33 stars•00 issues•00 pull requests•Updated Mar 13, 2026Mar 13, 2026

• ImmuScope

  Public
  Python

  •

  GNU General Public License v3.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Mar 7, 2026Mar 7, 2026

• VAtools

  Public
  A set of tools to annotate VCF files with expression and readcount data

  Python

  •

  MIT License

  •1313 forks•3030 stars•99 issues•11 pull request•Updated Jan 30, 2026Jan 30, 2026

• GenVisR

  Public
  Genome data visualizations

  R

  •

  Creative Commons Zero v1.0 Universal

  •6464 forks•222222 stars•6161 issues•44 pull requests•Updated Jan 10, 2026Jan 10, 2026

• ImmunoNX_protocol

  Public
  Tutorial for running immuno.wdl on Google Cloud

  MIT License

  •22 forks•44 stars•00 issues•00 pull requests•Updated Dec 23, 2025Dec 23, 2025

• bigmhc

  Public
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity

  Jupyter Notebook

  •

  Other

  •1414 forks•00 stars•00 issues•00 pull requests•Updated Dec 17, 2025Dec 17, 2025

• peptide-sequence-synthesis

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 15, 2025Dec 15, 2025

• griffithlab.org

  Public
  Griffith lab research website

  JavaScript

  •

  MIT License

  •2929 forks•1717 stars•11 issue•00 pull requests•Updated Nov 29, 2025Nov 29, 2025

• pvactools_percentiles_data

  Public
  pvactools algorithm prediction scores for reference peptides to enable percentiles calculations

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 21, 2025Nov 21, 2025

• neoag_vaccine_scripts

  Public
  Python

  •

  MIT License

  •11 fork•00 stars•99 issues•22 pull requests•Updated Sep 19, 2025Sep 19, 2025

• fusion_review

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 11, 2025Sep 11, 2025

• docker-hla-hd

  Public
  Dockerfile, dictionary and scripts needed to run hla-hd

  C

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 29, 2025Aug 29, 2025

• civic-meeting

  Public
  Repo for advertising and organizing CIViC unconference/meeting activities

  civiccurationunconference+ 1

  civiccurationunconferencecivic-meetings

  33 forks•1010 stars•1919 issues•00 pull requests•Updated Jul 24, 2025Jul 24, 2025

• CIVIC_SVI_Course

  Public
  A hands on course explaining how to complete somatic cancer variant interpretation using CIViC and current guidelines

  CSS

  •

  Creative Commons Attribution 4.0 International

  •22 forks•00 stars•00 issues•11 pull request•Updated Jun 6, 2025Jun 6, 2025

• htlv_integration_sites

  Public
  HTLV-1 integration site analysis notes and scripts

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 9, 2025Apr 9, 2025

• docker-vatools

  Public
  Dockerfile

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 4, 2025Mar 4, 2025

• pVACcompare

  Public
  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 28, 2025Jan 28, 2025

• docm

  Public archive
  Retired Project: Rails frontend to The Genome Institute's database of curated mutations (DoCM)

  Ruby

  •

  MIT License

  •55 forks•66 stars•66 issues•00 pull requests•Updated Oct 15, 2024Oct 15, 2024

• regtools

  Public
  Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

  C++

  •

  MIT License

  •3030 forks•136136 stars•4242 issues•55 pull requests•Updated Aug 21, 2024Aug 21, 2024

• usp7_scripts

  Public
  Analysis collaboration with Albert Kim lab - impact of USP7 knockout on splicing

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 16, 2024Jul 16, 2024