Repositories list

• project-ont-1kg

  Public
  Python

  •

  MIT License

  •2•1•0•1•Updated Mar 6, 2025Mar 6, 2025

• panacus

  Public
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs

  graphgfapangenomics+ 3pangenomepangenome-graphpangenome-growth

  Rust

  •

  MIT License

  •8•96•15•0•Updated Feb 24, 2025Feb 24, 2025

• GFAffix

  Public
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.

  gfapangenomicshandlegraph

  Rust

  •

  MIT License

  •5•36•3•0•Updated Feb 19, 2025Feb 19, 2025

• spp_dcj_v2

  Public
  C++

  •

  MIT License

  •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• gaftools

  Public
  General purpose utility related to GAF files

  Python

  •

  MIT License

  •0•22•3•0•Updated Jan 23, 2025Jan 23, 2025

• strand-seq-graph-phasing

  Public
  R

  •

  MIT License

  •2•8•7•0•Updated Jan 9, 2025Jan 9, 2025

• marschall-lab.github.io

  Public
  Group website of the Marschall Lab

  SCSS

  •

  MIT License

  •1•0•3•0•Updated Dec 29, 2024Dec 29, 2024

• project-male-assembly

  Public
  HGSVC SIG: targeted chromsome Y assembly

  Jupyter Notebook

  •

  MIT License

  •1•8•3•0•Updated Apr 12, 2023Apr 12, 2023

• hrfs

  Public
  Analysis of the set of founder sequences under a homologous recombination model

  bioinformaticsancestral-inferencefounder-sequences

  Rust

  •

  MIT License

  •0•4•0•0•Updated Jan 23, 2023Jan 23, 2023

• panpa

  Public
  PanPA is a tool for generating alignment of protein graphs

  GNU General Public License v3.0

  •0•1•0•0•Updated Nov 21, 2022Nov 21, 2022