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    150 repositories

    • image_portal_workflows

      Public
      Workflows related to project previously referred to as "Hedwig"
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•5•28•8•Updated Nov 14, 2024Nov 14, 2024

    • sitk-ibex

      Public
      Aligning images acquired with the IBEX microscopy imaging technique
      pythonmicroscopyimage-registration
      Python
      •
      Apache License 2.0
      •6•17•1•0•Updated Nov 11, 2024Nov 11, 2024

    • monarch-actions-switch-account

      Public
      GitHub Action used to switch between Monarch Spaces accounts
      modulespacesmonarchghaoeb-platform
      TypeScript
      •
      MIT License
      •0•1•8•6•Updated Nov 6, 2024Nov 6, 2024

    • niaid-design-system

      Public
      Welcome to the NIAID Design System.
      design-system
      Twig
      •
      Other
      •0•4•0•1•Updated Nov 6, 2024Nov 6, 2024

    • terraform-aws-managed-config-rules

      Public
      AWS Config Managed Rules Terraform Module
      awsmoduleterraformcomplianceaws-configaws-config-rulesoeb-platform
      HCL
      •
      MIT License
      •8•13•2•3•Updated Nov 1, 2024Nov 1, 2024

    • JoesFlow

      Public
      R
      •
      MIT License
      •0•0•2•0•Updated Oct 25, 2024Oct 25, 2024

    • tbp-cxr-outlier

      Public
      TB Portals Chest X-Ray Outlier Detector
      Jupyter Notebook
      •
      Apache License 2.0
      •1•0•2•0•Updated Oct 21, 2024Oct 21, 2024

    • rap_sitkCore

      Public
      Common imaging utilities for RAP
      Python
      •
      Apache License 2.0
      •0•0•1•3•Updated Oct 8, 2024Oct 8, 2024

    • terraform-aws-notify-slack

      Public
      Terraform module which creates SNS topic and Lambda function which sends notifications to Slack
      slackmoduleterraformoeb-platform
      Python
      •
      Apache License 2.0
      •343•0•0•1•Updated Oct 7, 2024Oct 7, 2024

    • nbp_events_niaid

      Public
      0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • imaris_extensions

      Public
      Algorithmic and Utility Extensions for the Imaris Program
      Python
      •
      Apache License 2.0
      •2•14•2•0•Updated Sep 30, 2024Sep 30, 2024

    • UMI-pacbio-pipeline

      Public
      Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).
      pacbioumipacbio-datanetwork-filteringunique-molecular-identifiers
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•6•0•0•Updated Sep 25, 2024Sep 25, 2024

    • 2024_Introduction-to-R

      Public
      HTML
      •2•2•0•0•Updated Sep 19, 2024Sep 19, 2024

    • fsc

      Public
      Code for: Integrating population and single-cell variations in vaccine responses identifies a naturally adjuvanted human immune setpoint
      R
      •1•0•0•0•Updated Sep 7, 2024Sep 7, 2024

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •7•0•0•0•Updated Sep 6, 2024Sep 6, 2024

    • ApiCommonData

      Public
      Perl
      •
      Apache License 2.0
      •3•0•0•0•Updated Aug 28, 2024Aug 28, 2024

    • dicom2stl

      Public
      Python
      •0•2•0•0•Updated Aug 27, 2024Aug 27, 2024

    • tomojs-pytools

      Public
      hedwigniaid-hedwigniaid-hedwig-tomojs
      Python
      •4•3•3•3•Updated Aug 20, 2024Aug 20, 2024

    • monogenic-immune-health

      Public
      This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Rachel Sparks, Nicholas Rachmaninoff, William W. Lau, Dylan C. Hirsch, Neha Bansal, ..., John S. Tsang: A Unified Metric of Human Immune Health (Nature Medicine, 2024)
      niaid-tsang-lab
      HTML
      •
      Other
      •2•3•0•1•Updated Aug 14, 2024Aug 14, 2024

    • meshconvert

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 14, 2024Aug 14, 2024

    • AMI_2024_Examples

      Public
      Code Examples for Kristen Browne's Talk at Association of Medical Illustrators 2024 conference.
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Aug 8, 2024Aug 8, 2024

    • LabKeytutorialModules

      Public
      Example modules used for demos and tutorials
      HTML
      •6•0•0•1•Updated Aug 6, 2024Aug 6, 2024

    • retired

      Public
      Products in this repository have been retired, but have been made available. They are no longer maintained by NIAID. If they have been implemented elsewhere, a link will be provided.
      HTML
      •0•0•0•0•Updated Jul 26, 2024Jul 26, 2024

    • TuningManager

      Public
      Perl
      •
      Apache License 2.0
      •1•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • ReFlow

      Public
      JavaScript
      •
      Apache License 2.0
      •2•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • GusSchema

      Public
      Perl
      •
      Apache License 2.0
      •3•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • GusAppFramework

      Public
      Perl
      •
      Apache License 2.0
      •2•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • CBIL

      Public
      Perl
      •
      Apache License 2.0
      •3•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • RAP-OHIF-Viewer

      Public
      OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
      TypeScript
      •
      MIT License
      •3.4k•1•0•0•Updated Jul 5, 2024Jul 5, 2024

    • tbportals.depot.api

      Public
      R package to the TB Portals Analytic API for easy retrieval of information from TB DEPOT.
      R
      •
      Other
      •2•0•0•1•Updated Jun 26, 2024Jun 26, 2024