Repositories list

• openworm.ai

  Public
  Scripts related to use of LLMs and other AI technology in OpenWorm

  HTML

  •

  MIT License

  •3•3•2•1•Updated Mar 4, 2026Mar 4, 2026

• openworm_docs

  Public
  Documentation for OpenWorm, i.e. docs.openworm.org

  Python

  •26•44•13•1•Updated Mar 2, 2026Mar 2, 2026

• CE_locomotion

  Public
  Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer

  C++

  •5•2•7•2•Updated Mar 1, 2026Mar 1, 2026

• c302

  Public
  The c302 framework for generating multiscale network models of C. elegans

  simulationopenworm

  simulationopenworm

  Python

  •

  MIT License

  •32•135•8•0•Updated Feb 20, 2026Feb 20, 2026

• ConnectomeToolbox

  Public
  Information on published connectomics data related to C. elegans

  Python

  •

  MIT License

  •7•4•2•0•Updated Feb 20, 2026Feb 20, 2026

• Blender2NeuroML

  Public
  Conversion script to bring neuron models created in Blender into NeuroML format

  Python

  •

  MIT License

  •5•17•2•0•Updated Feb 17, 2026Feb 17, 2026

• sibernetic

  Public
  This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion

  C

  •

  Other

  •110•384•28•12•Updated Feb 13, 2026Feb 13, 2026

• wormbrowser

  Public
  The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans

  JavaScript

  •

  Other

  •12•49•1•1•Updated Feb 13, 2026Feb 13, 2026

• OpenWorm

  Public
  Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

  simulationbiologyopenworm+ 1

  simulationbiologyopenwormelegans

  Python

  •

  MIT License

  •222•2.9k•41•3•Updated Feb 9, 2026Feb 9, 2026

• openworm.github.io

  Public
  OpenWorm main website

  HTML

  •35•29•17•1•Updated Feb 1, 2026Feb 1, 2026

• openwormbrowser-ios

  Public
  OpenWorm Browser for iOS, based on the open-3d-viewer, which was based on Google Body Browser

  Objective-C

  •

  Other

  •14•20•3•2•Updated Jan 20, 2026Jan 20, 2026

• WCONViewer

  Public
  Python based viewer for WCON files in 2D

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 17, 2025Dec 17, 2025

• Worm3DViewer

  Public
  Test repository for multiple views of the worm in 3D

  Python

  •0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

• NicolettiEtAl2024_MN_IN

  Public
  C.elegans motor and interneurons (Nicoletti at al. 2024)

  Python

  •4•0•4•2•Updated Nov 4, 2025Nov 4, 2025

• hodgkin_huxley_tutorial

  Public
  A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook

  Python

  •

  GNU Lesser General Public License v3.0

  •10•49•6•1•Updated Oct 30, 2025Oct 30, 2025

• wormneuroatlas

  Public
  Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), …

  Python

  •

  GNU General Public License v3.0

  •8•2•0•0•Updated Oct 22, 2025Oct 22, 2025

• WormWorx

  Public
  C. elegans simulator

  C

  •3•7•1•0•Updated Sep 5, 2025Sep 5, 2025

• CelegansNeuromechanicalGaitModulation

  Public
  C elegans Neuromechanical Gait Modulation Model

  C

  •7•1•0•0•Updated Aug 1, 2025Aug 1, 2025

• Worm2D

  Public
  Simulator of 2D worm body models

  C++

  •

  MIT License

  •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• tierpsy-tracker

  Public
  Multi-Worm Behaviour Tracker. README here:

  Python

  •

  MIT License

  •37•2•0•0•Updated Jun 29, 2025Jun 29, 2025

• .github

  Public
  The OpenWorm organisation template repository.

  Python

  •0•3•1•0•Updated Jun 19, 2025Jun 19, 2025

• muscle_model

  Public
  Model of C elegans body wall muscle based on Boyle & Cohen 2008

  Jupyter Notebook

  •

  Other

  •21•48•17•1•Updated May 15, 2025May 15, 2025

• JohnsonMailler_MuscleModel

  Public
  C. elegans muscle model from Johnson & Mailler 2015

  HTML

  •1•2•3•0•Updated May 15, 2025May 15, 2025

• NeuroPAL

  Public
  Scripts to analyse and convert NeuroPAL datasets

  neurosciencecelegansopenworm+ 2

  neurosciencecelegansopenworm3dneuroml

  Jupyter Notebook

  •0•5•0•0•Updated Apr 29, 2025Apr 29, 2025

• NicolettiEtAl2019_NeuronModels

  Public
  Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)

  Jupyter Notebook

  •2•1•2•0•Updated Apr 28, 2025Apr 28, 2025

• tracker-commons

  Public
  Compilation of information and code bases related to open-source trackers for C. elegans

  Scala

  •13•14•28•4•Updated Apr 23, 2025Apr 23, 2025

• geppetto-client

  Public
  The web client of a Geppetto application

  JavaScript

  •

  Other

  •2•6•70•27•Updated Apr 18, 2025Apr 18, 2025

• org.geppetto.frontend

  Public
  Geppetto Java frontend bundle

  Java

  •

  Other

  •24•29•2•4•Updated Apr 3, 2025Apr 3, 2025

• org.geppetto.datasources

  Public
  Java

  •

  Other

  •2•2•0•5•Updated Mar 28, 2025Mar 28, 2025

• org.geppetto.core

  Public
  Geppetto core bundle

  Java

  •

  Other

  •10•22•6•7•Updated Mar 28, 2025Mar 28, 2025