Repositories list

• capanno

  Public
  cwl/wdl/sm/nf files, tool and workflow metadata, and input specifications.

  snakemakenextflowwdl+ 1cwl

  WDL

  •

  Apache License 2.0

  •4•9•2•1•Updated Aug 22, 2025Aug 22, 2025

• bestguess

  Public
  classify groups based on input

  Jupyter Notebook

  •0•0•0•0•Updated Jan 6, 2024Jan 6, 2024

• capanno-utils

  Public
  Tools to manage repositories of bioinformatics metadata and workflow language files.

  Python

  •

  Apache License 2.0

  •2•0•0•1•Updated May 22, 2023May 22, 2023

• fyrworkshop

  Public
  Shell

  •0•0•0•0•Updated Jul 21, 2022Jul 21, 2022

• nfcore-sarek

  Public
  WDL

  •0•0•0•0•Updated Jun 2, 2022Jun 2, 2022

• test_data

  Public
  MIT License

  •0•0•0•0•Updated Apr 14, 2022Apr 14, 2022

• nfcore-config

  Public
  Dockerfile

  •0•0•0•0•Updated Apr 8, 2022Apr 8, 2022

• nfcore-ampliseq

  Public
  WDL

  •0•0•0•0•Updated Mar 31, 2022Mar 31, 2022

• scrnaseq

  Public
  A single-cell RNAseq pipeline for 10X genomics data

  Nextflow

  •

  MIT License

  •212•0•0•0•Updated Mar 31, 2022Mar 31, 2022

• test-datasets

  Public
  Test data to be used for automated testing with the nf-core pipelines

  MIT License

  •461•0•0•0•Updated Mar 31, 2022Mar 31, 2022

• nfcore-scrnaseq

  Public
  WDL

  •1•0•0•0•Updated Mar 29, 2022Mar 29, 2022

• nfcore-viralrecon

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-smrnaseq

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-rnaseq

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-proteomicslfq

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-pgdb

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-nanoseq

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-mhcquant

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-methylseq

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-metaboigniter

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-mag

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-hlatyping

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-fetchngs

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-epitopeprediction

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-eager

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-dualrnaseq

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-diaproteomics

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-cutandrun

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-clipseq

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• nfcore-chipseq

  Public
  WDL

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022