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    • Conda recipes for GitHub tools not available from conda-forge/bioconda
      Shell
      0000Updated Jun 4, 2026Jun 4, 2026
    • oncovault

      Public
      OncoVault - Comprehensive Data Warehouse for Pipeline Result
      Makefile
      0001Updated Jun 4, 2026Jun 4, 2026
    • steps-s3-copy

      Public
      A Steps orchestration for copying large volumes of S3 objects
      TypeScript
      MIT License
      01151Updated Jun 3, 2026Jun 3, 2026
    • copyrite

      Public
      A CLI tool for efficient checksum/copy operations across object stores
      Rust
      MIT License
      02150Updated Jun 3, 2026Jun 3, 2026
    • orcahouse

      Public
      🐳 UMCCR Pipeline & Workflow Data Warehouse
      HCL
      0001Updated Jun 3, 2026Jun 3, 2026
    • sash

      Public
      UMCCR post-processing WGS workflow
      Nextflow
      MIT License
      0171Updated Jun 3, 2026Jun 3, 2026
    • bolt

      Public
      UMCCR post-processing WGS logic and CLI tool
      Python
      GNU General Public License v3.0
      1042Updated Jun 3, 2026Jun 3, 2026
    • RNAsum

      Public
      Pipeline for generating RNAseq-based cancer patient reports
      R
      Other
      712171Updated Jun 2, 2026Jun 2, 2026
    • rportal

      Public
      :crystal_ball: R functionality for UMCCR Data Portal
      R
      Other
      0000Updated Jun 2, 2026Jun 2, 2026
    • oncoglue

      Public
      OncoGlue - Frontline ETL for Pipeline Result Data Warehouse
      Shell
      0000Updated Jun 2, 2026Jun 2, 2026
    • wrapica

      Public
      A suite of secondary / tertiary functions for running ICA API calls
      Python
      GNU General Public License v3.0
      0281Updated May 28, 2026May 28, 2026
    • orcavault

      Public
      OrcaVault - Comprehensive Data Warehouse for Pipeline Automation
      Shell
      0000Updated May 28, 2026May 28, 2026
    • orcaglue

      Public
      Frontline ETL for Data Warehouse
      0000Updated May 27, 2026May 27, 2026
    • A Docker image of REMS built for deployment in AWS and setup for UMCCR configuration
      TypeScript
      MIT License
      0004Updated May 27, 2026May 27, 2026
    • htsget-rs

      Public
      A server implementation of the htsget protocol for bioinformatics in Rust
      Rust
      MIT License
      950144Updated May 27, 2026May 27, 2026
    • k8tre-aws

      Public
      Infrastructure for UMCCR deployment of k8tre
      HCL
      3000Updated May 25, 2026May 25, 2026
    • k8tre

      Public
      Application for UMCCR deployment of k8tre
      Python
      MIT License
      11000Updated May 25, 2026May 25, 2026
    • gpgr

      Public
      :books: Genomics Platform Group Reporter
      R
      Other
      1940Updated May 24, 2026May 24, 2026
    • Public documentation for curation team
      0000Updated May 22, 2026May 22, 2026
    • sigrap

      Public
      :notes: Wrappers for somatic mutation signature analysis tools
      R
      Other
      0521Updated May 22, 2026May 22, 2026
    • A Terraform provider to manage the *content* of a REMS instance
      Go
      Mozilla Public License 2.0
      0046Updated May 20, 2026May 20, 2026
    • libica

      Public
      :snake: Python SDK for Illumina Connected Analytics (ICA) :dragon:
      Python
      MIT License
      4507Updated May 16, 2026May 16, 2026
    • 📘 Warehouse Documentation
      HTML
      0000Updated May 14, 2026May 14, 2026
    • Infrastructure as Code at UMCCR
      Python
      811163Updated May 11, 2026May 11, 2026
    • Deployment logic for htsget-rs
      TypeScript
      MIT License
      0001Updated May 9, 2026May 9, 2026
    • A Rust runtime for AWS Lambda
      Rust
      Apache License 2.0
      393000Updated May 8, 2026May 8, 2026
    • cwl-ica

      Public
      A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide
      Common Workflow Language
      MIT License
      213123Updated May 5, 2026May 5, 2026
    • Common modules/units/stacks used by reference from our terraform infrastructure
      HCL
      MIT License
      0000Updated Apr 23, 2026Apr 23, 2026
    • curtrail

      Public
      A Python library that turns AWS and ICA bill/log data into neat and tidy Polars dataframes
      Python
      MIT License
      0000Updated Apr 23, 2026Apr 23, 2026
    • A comprehensive cancer DNA/RNA analysis and reporting pipeline
      Nextflow
      MIT License
      31000Updated Apr 21, 2026Apr 21, 2026
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