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    • expectation-maximization for iterative subnetwork and context optimization
      Python
      0000Updated Feb 24, 2026Feb 24, 2026
    • fuzzifier

      Public
      Python
      0200Updated Feb 6, 2026Feb 6, 2026
    • Python
      MIT License
      0100Updated Jan 30, 2026Jan 30, 2026
    • gtamap

      Public
      Go
      MIT License
      00190Updated Jan 30, 2026Jan 30, 2026
    • FlowSets

      Public
      Jupyter Notebook
      0000Updated Jan 27, 2026Jan 27, 2026
    • Embeddable genomic visualization component based on the Integrative Genomics Viewer
      HTML
      MIT License
      244000Updated Aug 25, 2025Aug 25, 2025
    • R
      0000Updated Jan 19, 2025Jan 19, 2025
    • htsjdk

      Public
      A Java API for high-throughput sequencing data (HTS) formats.
      Java
      242000Updated Oct 5, 2024Oct 5, 2024
    • EmpiReS

      Public
      Java
      0000Updated Apr 19, 2024Apr 19, 2024
    • C
      0000Updated Feb 15, 2023Feb 15, 2023
    • Shell
      0000Updated Feb 15, 2023Feb 15, 2023
    • msEmpiRe

      Public
      Fork of zimmerlab/MS-EmpiRe with name compliant with bioconductor naming convention
      R
      GNU Affero General Public License v3.0
      5000Updated Feb 11, 2020Feb 11, 2020
    • MS-EmpiRe

      Public
      R
      GNU Affero General Public License v3.0
      51420Updated Feb 11, 2020Feb 11, 2020
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