Repositories list

• EM_optimization

  Public
  expectation-maximization for iterative subnetwork and context optimization

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 24, 2026Feb 24, 2026

• fuzzifier

  Public
  Python

  •00 forks•22 stars•00 issues•00 pull requests•Updated Feb 6, 2026Feb 6, 2026

• gtamap-publication

  Public
  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 30, 2026Jan 30, 2026

• gtamap

  Public
  Go

  •

  MIT License

  •00 forks•00 stars•1919 issues•00 pull requests•Updated Jan 30, 2026Jan 30, 2026

• FlowSets

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 27, 2026Jan 27, 2026

• gtamap-igv

  Public
  Embeddable genomic visualization component based on the Integrative Genomics Viewer

  HTML

  •

  MIT License

  •244244 forks•00 stars•00 issues•00 pull requests•Updated Aug 25, 2025Aug 25, 2025

• Differential-Workflow

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 19, 2025Jan 19, 2025

• htsjdk

  Public
  A Java API for high-throughput sequencing data (HTS) formats.

  Java

  •242242 forks•00 stars•00 issues•00 pull requests•Updated Oct 5, 2024Oct 5, 2024

• EmpiReS

  Public
  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 19, 2024Apr 19, 2024

• IMAGE-rnaseq_toolkit

  Public
  C

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 15, 2023Feb 15, 2023

• IMAGE-empires

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 15, 2023Feb 15, 2023

• msEmpiRe

  Public
  Fork of zimmerlab/MS-EmpiRe with name compliant with bioconductor naming convention

  R

  •

  GNU Affero General Public License v3.0

  •55 forks•00 stars•00 issues•00 pull requests•Updated Feb 11, 2020Feb 11, 2020

• MS-EmpiRe

  Public
  R

  •

  GNU Affero General Public License v3.0

  •55 forks•1414 stars•22 issues•00 pull requests•Updated Feb 11, 2020Feb 11, 2020