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Also check mid anchor in correctOverhangs

Status: Open.

#141 In zimmerlab/gtamap;

· mweyrich28 opened on Nov 14, 2025

MM logic requires region mask

Status: Open.

Bug

#140 In zimmerlab/gtamap;

· mweyrich28 opened on Nov 14, 2025

Split isValidMM into two steps

Status: Open.

#137 In zimmerlab/gtamap;

· mweyrich28 opened on Oct 28, 2025

add highlight to summary table click and summary igv

Status: Open.

Feature

#116 In zimmerlab/gtamap;

· KleinSamuel opened on Aug 28, 2025

fix summary table row selection

Status: Open.

Bug

#115 In zimmerlab/gtamap;

· KleinSamuel opened on Aug 28, 2025

add target region info to page header

Status: Open.

Feature

#111 In zimmerlab/gtamap;

· KleinSamuel opened on Aug 24, 2025

Add optional gtf param and use annotated introns instead of inferred introns

Status: Open.

Feature

#88 In zimmerlab/gtamap;

· mweyrich28 opened on Jun 3, 2025

Compare STAR Mapping to our mapping of ambiguous reads to paralog index

Status: Open.

Task

#75 In zimmerlab/gtamap;

· mweyrich28 opened on May 21, 2025

Haplotype Clustering - Include basequality

Status: Open.

Feature

#53 In zimmerlab/gtamap;

· mweyrich28 opened on May 13, 2025

implement clipping for out of bounds matches

Status: Open.

Feature

#36 In zimmerlab/gtamap;

· KleinSamuel opened on Apr 29, 2025

Automatically open SAM Viewer after mapper execution

Status: Open.

Feature

#35 In zimmerlab/gtamap;

· mweyrich28 opened on Apr 29, 2025

Investigate this read

Status: Open.

#30 In zimmerlab/gtamap;

· KleinSamuel opened on Apr 29, 2025