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ovgarol/README.md

Ecosystem modeller

Education

  • Biological Oceanography, Ph.D. - Kiel University (Germany)
  • Water science and technology, M.Sc. - Universidad de San Carlos de Guatemala
  • Applied Physics, B.Sc. - Universidad de San Carlos de Guatemala

Work experience

Post-Doc (2024-on going) @ Helmholtz-Zentrum hereon

  • I developed biogechemical mechanistic models, e.g. OxyPOM.
  • I model extreme events (e.g., aquatic heatwaves, low oxygen, and harmful algal blooms) in the Elbe Estuary in the project ElbeXtreme.
  • My current profile.

Ph.D. researcher (2019-2023) @ Helmholtz-Zentrum hereon

Research assistant (2014-2018) @ Universidad del Valle de Guatemala

  • Participation on the long-term monitoring program of Lake Atitlan.
  • Sampling, laboratory analyses (nutrients, toxins, and heavy metals).

Lab technician (2013) @ INSIVUMEH (Guatemala)

  • Sampling and laboratory analyses (microbiology, nutrients, and heavy metals).

Teaching experience

  • One ongoing thesis supervision (M.Sc.)
  • Teaching assistance for Ecological modelling - Kiel University.
  • Teaching assistance for Physics lab. - Universidad de San Carlos de Guatemala

Scientific publications

  • García-Oliva, O., and Wirtz, K. (2025) Complex structure of aquatic food-webs emerges from few assembly rules. Nature Ecology and Evolution, 9: 576–588. doi:10.1038/s41559-025-02647-1.
  • Achterberg, P., et al. (2025) Identifying and addressing the components of extreme physical-oceanographical events for improved risk management in coastal systems. Front. Mar. Sci.. doi:10.3389/fmars.2025.1681652.
  • García-Oliva, O., and Wirtz, K. (2022) Size-dependent and -independent prey selection of dinoflagellates. Mar. Biol., 169, 122. doi:10.1007/s00227-022-04102-2.
  • García-Oliva, O., Hantzsche, F.M., Boersma, M. and Wirtz, K.W. (2022) Phytoplankton and particle size spectra indicate intense mixotrophic dinoflagellates grazing from summer to winter. J. Plankton Res., 44, 224–240. doi:10.1093/plankt/fbac013.
  • Dix, M.A., Gómez, S., García-Oliva, O.F., Dix, M.W., Romero-Oliva, C.S. and Garcia-Polo, J. (2022) Input of Nitrogen and Phosphorus to Lake Atitlán (Guatemala) via atmospheric deposition (in Spanish). Ciencia, Tecnologı́a y Salud, 9(1): 6-18. doi:10.36829/63CTS.v9i1.1043.
  • Rodas-Pernillo, E., Vasquez-Moscoso, C. A., García, O.F. (2020). Dynamics of the consumption and nutrient supply of phytoplankton, dominated by Microcystis sp. (Cyanophyceae) of Lake Amatitlán (in Spanish). Ciencia, Tecnología Y Salud, 7(1). doi.:10.36829/63CTS.v7i1.709.

Pre-prints and other publications

  1. García-Oliva, O., Lemmen, C., Li, X., and Wirtz, K. (2025) Disentangling peri-urban river hypoxia (pre-print). arXiv 2510.05775 doi:10.48550/arXiv.2510.05775.
  2. García-Oliva, O. (2024) Detritus identification in FlowCAM using a simple binary classifier (pre-print). bioRxiv 2024.11.18.624123. doi:10.1101/2024.11.18.624123.
  3. Barreno Ortiz, F.M., García-Oliva, O.F., Pérez Xoquic, A. (2017) Payment for wastewater treatment services as a measure of adaptation to climate change (Panajachel, Guatemala) (in Spanish). In: Cambio climático y desarrollo social con énfasis en el occidente de Guatemala (pp. 153-175). Mendez, J.J. (Ed.) FLACSO-Guatemala. ISBN: 978-9929-585-49-2.

Pinned Loading

  1. detritus-logistic-classification detritus-logistic-classification Public

    logistic model for detritus classification in FlowCAM data

    Jupyter Notebook

  2. elbe-oxygen-prediction elbe-oxygen-prediction Public

    Empirical auto-regresive model for hypoxic events

    R 1

  3. fabm-oxypom fabm-oxypom Public

    Forked from oceanmodeling/fabm-oxypom

    FABM OxyPOM and DiaMO: simple models for dissolved oxygen and biogeochemistry

    Fortran 1

  4. moving_particles_counter moving_particles_counter Public

    This script identifies, classify, and counts moving particles in video.

    Python

  5. aquatic-food-webs-Z aquatic-food-webs-Z Public

    databases and script for a simple food web model

    R 1