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54 Open 111 Closed
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Issues list

PGGB takes more than 96 hours of walltime on HPC
#407 opened Sep 2, 2024 by kiratalreja3
1
How to handle plasmid sequences for bacterial assemblies
#406 opened Aug 30, 2024 by UpalabdhaD
Follow up on issues with Singularity
#404 opened Aug 16, 2024 by cjfields
1
wfmash to speed up
#403 opened Aug 1, 2024 by OZTaekOppa
1
Unable to generate giraffe indexes for PGGB graph
#400 opened Jun 10, 2024 by KopalliV
PGGB singularity vg deconstruct not recognizing sample prefix
#399 opened Jun 7, 2024 by SimonaSecomandi
mismatched line lengths at line 3 within sequence
#398 opened May 9, 2024 by Ahmad-40
Recommended practices for downstream analyses
#394 opened Apr 27, 2024 by agolicz
Memory size required to build large genomes
#385 opened Apr 3, 2024 by Lucio-Yang
14
For aligning chromosomes of different species over 100MYA or div is it better to use .masked files?
#383 opened Mar 20, 2024 by Isoris
the effect of n_mappings question Further information is requested
#382 opened Mar 19, 2024 by subwaystation
what dose "consensus path" generated with parameter -Q mean
#378 opened Mar 18, 2024 by yipukangda
2
Setting the poa-length-target(s)
#375 opened Mar 11, 2024 by jonahcullen
computational efficiency of pggb
#370 opened Jan 25, 2024 by yihangs
3
Gradual increase of pan-genomes
#364 opened Dec 15, 2023 by Tonitsk8264
1
Parameters optimization
#360 opened Dec 2, 2023 by omar-almolla209
seqwish fails when --output-dir contains commas
#356 opened Nov 24, 2023 by kdm9
1
How to visulize PGGB graph in Sequence Tube Map?
#353 opened Nov 9, 2023 by arslan9732
Command terminated by signal 8
#345 opened Oct 25, 2023 by clemgoub
2
the parameters to build pangenome for metagenomes
#337 opened Oct 17, 2023 by Wenhai-Zhang
2
How to understand the vcf file output by PGGB？ question Further information is requested
#334 opened Sep 30, 2023 by Lucio-Yang
3
How to handle when two contigs from the same assembly sligtly overlap
#329 opened Sep 15, 2023 by Isoris
7
'SN:Z' and 'SO:i' tags for segments/nodes
#328 opened Sep 5, 2023 by songbowang125
1
Use of pggb to generate alignments for phylogenomics
#319 opened Jul 26, 2023 by sivico26
2
Even if the genome is small, shouldn't too many samples be added to build the graph
#316 opened Jun 28, 2023 by Wwwwwwwyc
8
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