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Make joblib optional

enhancementNew feature or requestNew feature or request

Status: Open.

#416 In paulshuker/coppafisher;

· paulshuker opened on Jan 27, 2026

Highlight gene/cell type the mouse is over in Viewer gene legend

diagnosticsUsed for debugging resultsUsed for debugging results

enhancementNew feature or requestNew feature or request

Status: Open.

#414 In paulshuker/coppafisher;

· paulshuker opened on Dec 16, 2025

Auto thresholds for each channel separately

enhancementNew feature or requestNew feature or request

find spotsFind spots stage of the pipelineFind spots stage of the pipeline

Status: Open.

#410 In paulshuker/coppafisher;

· paulshuker opened on Dec 8, 2025

Discriminality scoring option for Viewer spots

diagnosticsUsed for debugging resultsUsed for debugging results

enhancementNew feature or requestNew feature or request

Status: Open.

#408 In paulshuker/coppafisher;

· paulshuker opened on Dec 1, 2025

2d input support

enhancementNew feature or requestNew feature or request

Status: Open.

#403 In paulshuker/coppafisher;

· paulshuker opened on Nov 17, 2025

·  

Version 2

Delete redundant notebook variables

Status: Open.

#375 In paulshuker/coppafisher;

· paulshuker opened on Sep 8, 2025

·  

Version 2

Tile indexing rework

enhancementNew feature or requestNew feature or request

extractExtract stage of the pipelineExtract stage of the pipeline

Status: Open.

#374 In paulshuker/coppafisher;

· paulshuker opened on Sep 8, 2025

·  

Version 2

Improved filter PSF

Status: Open.

#369 In paulshuker/coppafisher;

· paulshuker opened on Sep 1, 2025

Fix pytest-cov code coverage

bugSomething isn't workingSomething isn't working

Status: Open.

#366 In paulshuker/coppafisher;

· paulshuker opened on Aug 14, 2025

In depth look at registration

registerRegister stage of the pipelineRegister stage of the pipeline

Status: Open.

#354 In paulshuker/coppafisher;

· paulshuker opened on Jul 25, 2025

OSError: [Errno 22] Invalid argument

bugSomething isn't workingSomething isn't working

registerRegister stage of the pipelineRegister stage of the pipeline

Status: Open.

#307 In paulshuker/coppafisher;

· paulshuker opened on Apr 10, 2025

Suggestion: Call spots sqrt(N_genes) -> 1-e^{-a N_genes}

call spotsCall/reference spots stage of the pipelineCall/reference spots stage of the pipeline

enhancementNew feature or requestNew feature or request

Status: Open.

#303 In paulshuker/coppafisher;

· paulshuker opened on Apr 4, 2025