Add an automatic algorithm to find group of triggers, i.e. "takes" or "runs", and attempt splitting recording automagically.

[smoia]

Closes #

Proposed Changes

• Add a brand new cluster estimation to find groups of triggers, i.e. takes or runs.
• Actually allow SMR (Spike2) files to be processed by phys2bids.
• Also update workflows since I'm there.

Change Type

• bugfix (+0.0.1)
• minor (+0.1.0)
• major (+1.0.0)
• refactoring (no version update)
• test (no version update)
• infrastructure (no version update)
• documentation (no version update)
• other

Checklist before review

• I added everything I wanted to add to this PR.
• [Code or tests only] I wrote/updated the necessary docstrings.
• [Code or tests only] I ran and passed tests locally.
• [Documentation only] I built the docs locally.
• My contribution is harmonious with the rest of the code: I'm not introducing repetitions.
• My code respects the adopted style, especially linting conventions.
• The title of this PR is explanatory on its own, enough to be understood as part of a changelog.
• I added or indicated the right labels.

• I added information regarding the timeline of completion for this PR.

• Please, comment on my PR while it's a draft and give me feedback on the development!

[codecov]

Codecov Report

❌ Patch coverage is 11.11111% with 64 lines in your changes missing coverage. Please review.
✅ Project coverage is 85.83%. Comparing base (63c3d83) to head (3e5bea3).
⚠️ Report is 5 commits behind head on master.

Files with missing lines	Patch %	Lines
phys2bids/slice4phys.py	1.69%	58 Missing ⚠️
phys2bids/phys2bids.py	28.57%	5 Missing ⚠️
phys2bids/physio_obj.py	66.66%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##           master     #482      +/-   ##
==========================================
- Coverage   91.15%   85.83%   -5.32%     
==========================================
  Files           8        8              
  Lines        1006     1073      +67     
==========================================
+ Hits          917      921       +4     
- Misses         89      152      +63     

Files with missing lines	Coverage Δ
phys2bids/cli/run.py	96.66% <100.00%> (+0.23%)	⬆️
phys2bids/utils.py	98.09% <100.00%> (ø)
phys2bids/physio_obj.py	94.06% <66.66%> (ø)
phys2bids/phys2bids.py	84.97% <28.57%> (-2.20%)	⬇️
phys2bids/slice4phys.py	37.11% <1.69%> (-55.00%)	⬇️

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[RayStick]

"This might work 95%% of the time" is a funny sentence! Can we be clearer on why it may not? Or can we say something like "please check this output/plot carefully to see if it has done X task correctly"

[RayStick]

Suggested change

	If it doesn't find at least a group.
	If it doesn't find at least one group.

[RayStick]

• Changes to the workflow files and setup.cfg look fine
• Changes to the others files - I have read them over, but not run anything. Would you like me to run it? If yes, can you point me towards some files to test with? Including how you ran them
• Assuming we need to update the tests for the coverage to be happy? If I can understand the function better, I can try to help with updating the tests