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Basic LitData optimization of unpaired OAS; dataloader #214

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Basic LitData optimization of unpaired OAS; dataloader #214

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37e8c4e
Streaming .csv.gz unpaired OAS sequences from s3
everyday847 Feb 22, 2026
f0ceefc
let's not make bizarre uv.lock changes
everyday847 Feb 22, 2026
8a37f09
parquet
everyday847 Feb 22, 2026
43c42d1
iid per sequence
everyday847 Feb 22, 2026
ce21056
progress
everyday847 Feb 22, 2026
3f07e21
split without loading everything into memory
everyday847 Feb 22, 2026
f92dd31
Merge remote-tracking branch 'origin/main' into w/oas_litdata
watkina6 Mar 9, 2026
34eb42c
Address reviews via refactors
watkina6 Mar 9, 2026
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1 change: 1 addition & 0 deletions pyproject.toml
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Expand Up @@ -62,6 +62,7 @@ lobster_dgeb_eval = "lobster.cmdline.dgeb_eval:main"
lobster_dgeb_mock_eval = "lobster.evaluation.dgeb_mock_runner:main"
lobster_mcp_server = "lobster.mcp.server:main"
lobster_mcp_setup = "lobster.mcp.setup:main"
lobster_optimize_sequences = "lobster.cmdline.optimize_sequences:main"
lobster_ume_checkpoints = "lobster.cmdline.manage_ume_checkpoints:main"

[project.optional-dependencies]
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