Updated notebooks to use relative paths

notebooks/01_Introducing_Python.ipynb

@@ -32,7 +32,7 @@
       "\n",
       "Matt Knepley and Aron Ahmadia\n",
       "\n",
-      "[![Creative Commons License](./files/figures/creative_commons_logo.png)](http://creativecommons.org/licenses/by/3.0/deed.en_US)  "
+      "[![Creative Commons License](../figures/creative_commons_logo.png)](http://creativecommons.org/licenses/by/3.0/deed.en_US)  "
      ]
     },
     {
@@ -515,7 +515,7 @@
       "and also includes motivating material from \n",
       "[Nathan Collier](http://www.mendeley.com/profiles/nathan-collier/), KAUST.\n",
       "\n",
-      "<a href=\"http://www.amazon.com/Hans-Petter-Langtangen/e/B001K6A0IA\"><img src=\"./files/figures/books.png\"/> </a>\n"
+      "<a href=\"http://www.amazon.com/Hans-Petter-Langtangen/e/B001K6A0IA\"><img src=\"../figures/books.png\"/> </a>\n"
      ]
     },
     {
@@ -598,7 +598,7 @@
       "reproducible). However, beware that there is no end to the number\n",
       "of different ways to do essentially the same thing. \n",
       "\n",
-      "![Recall we want to script to SAVE time](./files/figures/careful.png)\n",
+      "![Recall we want to script to SAVE time](../figures/careful.png)\n",
       "\n",
       "> Image credit [Bruno Oliveira](https://plus.google.com/102451193315916178828/posts/MGxauXypb1Y)"
      ]
@@ -696,7 +696,7 @@
       "\n",
       "### Stiffness matrix computation\n",
       "\n",
-      "![Stiffness matrix](./files/figures/fem.png)\n"
+      "![Stiffness matrix](../figures/fem.png)\n"
      ]
     },
     {
@@ -714,7 +714,7 @@
       "\n",
       "### Python parses a datafile and makes plots of current progress\n",
       "\n",
-      "![Log](./files/figures/log.png)\n"
+      "![Log](../figures/log.png)\n"
      ]
     },
     {
@@ -732,7 +732,7 @@
       "\n",
       "### Nonlinear, time dependent problem\n",
       "\n",
-      "![NonLinear problem](./files/figures/dsw.png)"
+      "![NonLinear problem](../figures/dsw.png)"
      ]
     },
     {
@@ -750,7 +750,7 @@
       "\n",
       "### Method for fitting surface to data\n",
       "\n",
-      "![Prototypes](./files/figures/molt.png)\n"
+      "![Prototypes](../figures/molt.png)\n"
      ]
     },
     {
@@ -769,7 +769,7 @@
       "\n",
       "### Python manages floors and columns\n",
       "\n",
-      "![Structural program](./files/figures/struct.png)"
+      "![Structural program](../figures/struct.png)"
      ]
     },
     {
@@ -787,7 +787,7 @@
       "\n",
       "### Python runs C code, post-processes the results, and generates a LaTeX table\n",
       "\n",
-      "![Result Generation](./files/figures/dpg.png)\n"
+      "![Result Generation](../figures/dpg.png)\n"
      ]
     },
     {
@@ -867,8 +867,8 @@
      "collapsed": false,
      "input": [
       "import math\n",
-      "infile = \"files/examples/data/numbers\"\n",
-      "outfile = \"files/examples/data/f_numbers\"\n",
+      "infile = \"../examples/data/numbers\"\n",
+      "outfile = \"../examples/data/f_numbers\"\n",
       "\n",
       "f = open(infile,'r')\n",
       "g = open(outfile,'w')\n",
@@ -994,7 +994,7 @@
       "import re\n",
       "pattern1 = \"@Book{(.*),\"\n",
       "pattern2 = \"\\s+title\\s+=\\s+{(.*)},\"\n",
-      "for line in file('files/examples/data/python.bib'):\n",
+      "for line in file('../examples/data/python.bib'):\n",
       "    match = re.search(pattern1,line)\n",
       "    if match: \n",
       "        print \"Found a book with the tag '%s'\" % match.group(1)\n",

notebooks/02_Speeding_Python.ipynb

@@ -28,7 +28,7 @@
       "\n",
       "Matt Knepley and Aron Ahmadia\n",
       "\n",
-      "[![Creative Commons License](./files/figures/creative_commons_logo.png)](http://creativecommons.org/licenses/by/3.0/deed.en_US)  "
+      "[![Creative Commons License](../figures/creative_commons_logo.png)](http://creativecommons.org/licenses/by/3.0/deed.en_US)  "
      ]
     },
     {
@@ -265,7 +265,7 @@
       "* single data-type objects\n",
       "* powerful array scalar types\n",
       "\n",
-      "![three fundamental](./files/figures/numpy/threefundamental.png)\n",
+      "![three fundamental](../figures/numpy/threefundamental.png)\n",
       "\n"
      ]
     },

notebooks/03.1_Distributed_Computing.ipynb

@@ -20,7 +20,7 @@
       "<center>\n",
       "*[This tutorial](https://github.com/pyHPC/pyhpc-tutorial) has been collectively developed by the [PyHPC Community](https://github.com/pyHPC) and is available for reuse under a CC BY license.  \n",
       "All code samples are available for reuse under the terms of the [MIT license](http://opensource.org/licenses/MIT).*  \n",
-      "[![Creative Commons License](/files/figures/creative_commons_logo.png)](http://creativecommons.org/licenses/by/3.0/deed.en_US)</center>"
+      "[![Creative Commons License](../figures/creative_commons_logo.png)](http://creativecommons.org/licenses/by/3.0/deed.en_US)</center>"
      ]
     },
     {
@@ -885,7 +885,7 @@
      },
      "source": [
       "## Basic Collectives: Broadcast, Scatter, and Gather\n",
-      "![](/files/figures/broadcast_scatter_gather.png)\n"
+      "![](../figures/broadcast_scatter_gather.png)\n"
      ]
     },
     {
@@ -1071,7 +1071,7 @@
      "source": [
       "## Reduce and Scan\n",
       "\n",
-      "![](/files/figures/reduce_scan.png)\n"
+      "![](../figures/reduce_scan.png)\n"
      ]
     },
     {

notebooks/03_Scaling_Python.ipynb

@@ -33,7 +33,7 @@
       "\n",
       "Matt Knepley and Aron Ahmadia\n",
       "\n",
-      "[![Creative Commons License](./files/figures/creative_commons_logo.png)](http://creativecommons.org/licenses/by/3.0/deed.en_US)  "
+      "[![Creative Commons License](../figures/creative_commons_logo.png)](http://creativecommons.org/licenses/by/3.0/deed.en_US)  "
      ]
     },
     {

notebooks/Appendix_01_Resources.ipynb

@@ -36,9 +36,9 @@
       "Chief Technology Officer  \n",
       "RunMyCode.org\n",
       "\n",
-      "[![Creative Commons License](/files/figures/creative_commons_logo.png)](http://creativecommons.org/licenses/by/3.0/deed.en_US)  \n",
+      "[![Creative Commons License](../figures/creative_commons_logo.png)](http://creativecommons.org/licenses/by/3.0/deed.en_US)  \n",
       "\n",
-      "![KAUST Logo](/files/figures/kaust.png)"
+      "![KAUST Logo](../figures/kaust.png)"
      ]
     },
     {

notebooks/Appendix_02_PETSc4Py.ipynb

@@ -31,9 +31,9 @@
       "Chief Technology Officer  \n",
       "RunMyCode.org\n",
       "\n",
-      "[![Creative Commons License](/files/figures/creative_commons_logo.png)](http://creativecommons.org/licenses/by/3.0/deed.en_US)  \n",
+      "[![Creative Commons License](../figures/creative_commons_logo.png)](http://creativecommons.org/licenses/by/3.0/deed.en_US)  \n",
       "\n",
-      "![KAUST Logo](/files/figures/kaust.png)"
+      "![KAUST Logo](../figures/kaust.png)"
      ]
     },
     {