-
Notifications
You must be signed in to change notification settings - Fork 5
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
3 changed files
with
328 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,24 @@ | ||
| --- | ||
| name: Bug report | ||
| about: Create a report to help us improve | ||
| title: "[BUG]" | ||
| labels: '' | ||
| assignees: '' | ||
|
|
||
| --- | ||
|
|
||
| **Describe the bug** | ||
| A clear and concise description of what the bug is. | ||
|
|
||
| **To Reproduce** | ||
| Steps to reproduce the behavior, is needed a link to the samples causing the problem | ||
|
|
||
| **Expected behavior** | ||
| A clear and concise description of what you expected to happen. | ||
|
|
||
| **Environment:** | ||
| - OS: [e.g. Ubuntu 18.04] | ||
| - Dadaist2 version: | ||
|
|
||
| **Additional context** | ||
| Add any other context about the problem here. |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| --- | ||
| name: Feature request | ||
| about: Suggest an idea for this project | ||
| title: '' | ||
| labels: '' | ||
| assignees: '' | ||
|
|
||
| --- | ||
|
|
||
| **Is your feature request related to a problem? Please describe.** | ||
| A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] | ||
|
|
||
| **Describe the solution you'd like** | ||
| A clear and concise description of what you want to happen. | ||
|
|
||
| **Additional context** | ||
| Add any other context or screenshots about the feature request here. |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,287 @@ | ||
| channels: | ||
| - bioconda | ||
| - conda-forge | ||
| - defaults | ||
| dependencies: | ||
| - _r-mutex=1.0.1 | ||
| - argtable2=2.13 | ||
| - bioconductor-biobase=2.50.0 | ||
| - bioconductor-biocgenerics=0.36.0 | ||
| - bioconductor-biocparallel=1.24.1 | ||
| - bioconductor-biomformat=1.18.0 | ||
| - bioconductor-biostrings=2.58.0 | ||
| - bioconductor-dada2=1.18.0 | ||
| - bioconductor-decipher=2.18.1 | ||
| - bioconductor-delayedarray=0.16.3 | ||
| - bioconductor-genomeinfodb=1.26.4 | ||
| - bioconductor-genomeinfodbdata=1.2.4 | ||
| - bioconductor-genomicalignments=1.26.0 | ||
| - bioconductor-genomicranges=1.42.0 | ||
| - bioconductor-iranges=2.24.1 | ||
| - bioconductor-matrixgenerics=1.2.1 | ||
| - bioconductor-microbiome=1.12.0 | ||
| - bioconductor-multtest=2.46.0 | ||
| - bioconductor-phyloseq=1.34.0 | ||
| - bioconductor-rhdf5=2.34.0 | ||
| - bioconductor-rhdf5filters=1.2.0 | ||
| - bioconductor-rhdf5lib=1.12.1 | ||
| - bioconductor-rhtslib=1.22.0 | ||
| - bioconductor-rsamtools=2.6.0 | ||
| - bioconductor-s4vectors=0.28.1 | ||
| - bioconductor-shortread=1.48.0 | ||
| - bioconductor-summarizedexperiment=1.20.0 | ||
| - bioconductor-xvector=0.30.0 | ||
| - bioconductor-zlibbioc=1.36.0 | ||
| - biom-format=2.1.10 | ||
| - bwidget=1.9.14 | ||
| - bzip2=1.0.8 | ||
| - c-ares=1.17.1 | ||
| - ca-certificates=2021.7.5 | ||
| - cached-property=1.5.2 | ||
| - cached_property=1.5.2 | ||
| - cairo=1.16.0 | ||
| - cctools_osx-64=949.0.1 | ||
| - certifi=2021.5.30 | ||
| - clang=11.1.0 | ||
| - clang-11=11.1.0 | ||
| - clang_osx-64=11.1.0 | ||
| - clangxx=11.1.0 | ||
| - clangxx_osx-64=11.1.0 | ||
| - click=8.0.1 | ||
| - clustalo=1.2.4 | ||
| - colorama=0.4.4 | ||
| - commonmark=0.9.1 | ||
| - compiler-rt=11.1.0 | ||
| - compiler-rt_osx-64=11.1.0 | ||
| - curl=7.77.0 | ||
| - cutadapt=3.4 | ||
| - cycler=0.10.0 | ||
| - dadaist2=1.0.2 | ||
| - dnaio=0.5.1 | ||
| - fastp=0.20.1 | ||
| - fasttree=2.1.10 | ||
| - font-ttf-dejavu-sans-mono=2.37 | ||
| - font-ttf-inconsolata=3.000 | ||
| - font-ttf-source-code-pro=2.038 | ||
| - font-ttf-ubuntu=0.83 | ||
| - fontconfig=2.13.1 | ||
| - fonts-conda-ecosystem=1 | ||
| - fonts-conda-forge=1 | ||
| - freetype=2.10.4 | ||
| - fribidi=1.0.10 | ||
| - future=0.18.2 | ||
| - gettext=0.21.0 | ||
| - gfortran_impl_osx-64=9.3.0 | ||
| - gfortran_osx-64=9.3.0 | ||
| - gmp=6.2.1 | ||
| - graphite2=1.3.14 | ||
| - gsl=2.6 | ||
| - h5py=3.2.1 | ||
| - harfbuzz=2.8.1 | ||
| - hdf5=1.10.6 | ||
| - icu=68.1 | ||
| - isa-l=2.30.0 | ||
| - isl=0.22.1 | ||
| - jbig=2.1 | ||
| - jpeg=9d | ||
| - kiwisolver=1.3.1 | ||
| - krb5=1.19.1 | ||
| - lcms2=2.12 | ||
| - ld64_osx-64=530 | ||
| - ldid=2.1.2 | ||
| - lerc=2.2.1 | ||
| - libblas=3.9.0 | ||
| - libcblas=3.9.0 | ||
| - libclang-cpp11.1=11.1.0 | ||
| - libcurl=7.77.0 | ||
| - libcxx=11.1.0 | ||
| - libdeflate=1.7 | ||
| - libedit=3.1.20210216 | ||
| - libev=4.33 | ||
| - libffi=3.3 | ||
| - libgfortran=5.0.0 | ||
| - libgfortran-devel_osx-64=9.3.0 | ||
| - libgfortran5=9.3.0 | ||
| - libglib=2.68.3 | ||
| - libiconv=1.16 | ||
| - liblapack=3.9.0 | ||
| - libllvm11=11.1.0 | ||
| - libllvm12=12.0.0 | ||
| - libnghttp2=1.43.0 | ||
| - libopenblas=0.3.15 | ||
| - libpng=1.6.37 | ||
| - libssh2=1.9.0 | ||
| - libtiff=4.3.0 | ||
| - libwebp-base=1.2.0 | ||
| - libxml2=2.9.12 | ||
| - libzip=1.7.3 | ||
| - llvm-openmp=11.1.0 | ||
| - llvm-tools=11.1.0 | ||
| - lz4-c=1.9.3 | ||
| - make=4.3 | ||
| - matplotlib-base=3.4.2 | ||
| - mpc=1.1.0 | ||
| - mpfr=4.0.2 | ||
| - ncurses=6.2 | ||
| - numpy=1.20.3 | ||
| - olefile=0.46 | ||
| - openjpeg=2.4.0 | ||
| - openssl=1.1.1k | ||
| - pandas=1.2.4 | ||
| - pango=1.48.5 | ||
| - patsy=0.5.1 | ||
| - pcre=8.45 | ||
| - pcre2=10.36 | ||
| - perl=5.26.2 | ||
| - perl-capture-tiny=0.48 | ||
| - perl-carp=1.38 | ||
| - perl-exporter=5.72 | ||
| - perl-extutils-makemaker=7.36 | ||
| - perl-fastx-reader=1.0.5 | ||
| - pigz=2.6 | ||
| - pip=21.1.2 | ||
| - pixman=0.40.0 | ||
| - pygments=2.9.0 | ||
| - pyparsing=2.4.7 | ||
| - python=3.9.5 | ||
| - python-dateutil=2.8.1 | ||
| - python-isal=0.10.0 | ||
| - python_abi=3.9 | ||
| - pytz=2021.1 | ||
| - pyyaml=5.4.1 | ||
| - qax=0.9.2 | ||
| - r-ade4=1.7_17 | ||
| - r-ape=5.5 | ||
| - r-assertthat=0.2.1 | ||
| - r-backports=1.2.1 | ||
| - r-base=4.0.5 | ||
| - r-bh=1.75.0_0 | ||
| - r-bit=4.0.4 | ||
| - r-bit64=4.0.5 | ||
| - r-bitops=1.0_7 | ||
| - r-blob=1.2.1 | ||
| - r-brio=1.1.2 | ||
| - r-cachem=1.0.5 | ||
| - r-callr=3.7.0 | ||
| - r-cli=2.5.0 | ||
| - r-cluster=2.1.2 | ||
| - r-codetools=0.2_18 | ||
| - r-colorspace=2.0_1 | ||
| - r-crayon=1.4.1 | ||
| - r-data.table=1.14.0 | ||
| - r-dbi=1.1.1 | ||
| - r-desc=1.3.0 | ||
| - r-diffobj=0.3.4 | ||
| - r-digest=0.6.27 | ||
| - r-dplyr=1.0.6 | ||
| - r-ellipsis=0.3.2 | ||
| - r-evaluate=0.14 | ||
| - r-fansi=0.5.0 | ||
| - r-farver=2.1.0 | ||
| - r-fastmap=1.1.0 | ||
| - r-foreach=1.5.1 | ||
| - r-formatr=1.11 | ||
| - r-futile.logger=1.4.3 | ||
| - r-futile.options=1.0.1 | ||
| - r-generics=0.1.0 | ||
| - r-ggplot2=3.3.4 | ||
| - r-glue=1.4.2 | ||
| - r-gtable=0.3.0 | ||
| - r-hms=1.1.0 | ||
| - r-hwriter=1.3.2 | ||
| - r-igraph=1.2.6 | ||
| - r-isoband=0.2.4 | ||
| - r-iterators=1.0.13 | ||
| - r-jpeg=0.1_8.1 | ||
| - r-jsonlite=1.7.2 | ||
| - r-labeling=0.4.2 | ||
| - r-lambda.r=1.2.4 | ||
| - r-lattice=0.20_44 | ||
| - r-latticeextra=0.6_29 | ||
| - r-lifecycle=1.0.0 | ||
| - r-magrittr=2.0.1 | ||
| - r-mass=7.3_54 | ||
| - r-matrix=1.3_2 | ||
| - r-matrixstats=0.59.0 | ||
| - r-memoise=2.0.0 | ||
| - r-mgcv=1.8_36 | ||
| - r-munsell=0.5.0 | ||
| - r-nlme=3.1_152 | ||
| - r-permute=0.9_5 | ||
| - r-pillar=1.6.1 | ||
| - r-pixmap=0.4_12 | ||
| - r-pkgconfig=2.0.3 | ||
| - r-pkgload=1.2.1 | ||
| - r-plogr=0.2.0 | ||
| - r-plyr=1.8.6 | ||
| - r-png=0.1_7 | ||
| - r-praise=1.0.0 | ||
| - r-prettyunits=1.1.1 | ||
| - r-processx=3.5.2 | ||
| - r-progress=1.2.2 | ||
| - r-ps=1.6.0 | ||
| - r-purrr=0.3.4 | ||
| - r-r6=2.5.0 | ||
| - r-rcolorbrewer=1.1_2 | ||
| - r-rcpp=1.0.6 | ||
| - r-rcppparallel=5.1.4 | ||
| - r-rcurl=1.98_1.3 | ||
| - r-rematch2=2.1.2 | ||
| - r-reshape2=1.4.4 | ||
| - r-rlang=0.4.11 | ||
| - r-rprojroot=2.0.2 | ||
| - r-rsqlite=2.2.5 | ||
| - r-rstudioapi=0.13 | ||
| - r-rtsne=0.15 | ||
| - r-scales=1.1.1 | ||
| - r-snow=0.4_3 | ||
| - r-sp=1.4_5 | ||
| - r-stringi=1.6.2 | ||
| - r-stringr=1.4.0 | ||
| - r-survival=3.2_11 | ||
| - r-testthat=3.0.3 | ||
| - r-tibble=3.1.2 | ||
| - r-tidyr=1.1.3 | ||
| - r-tidyselect=1.1.1 | ||
| - r-utf8=1.2.1 | ||
| - r-vctrs=0.3.8 | ||
| - r-vegan=2.5_7 | ||
| - r-viridislite=0.4.0 | ||
| - r-waldo=0.2.5 | ||
| - r-withr=2.4.2 | ||
| - readline=8.1 | ||
| - rich=10.6.0 | ||
| - scipy=1.6.3 | ||
| - seaborn=0.11.1 | ||
| - seaborn-base=0.11.1 | ||
| - seqfu=1.3.3 | ||
| - setuptools=52.0.0 | ||
| - six=1.16.0 | ||
| - sqlite=3.35.5 | ||
| - statsmodels=0.12.2 | ||
| - tapi=1100.0.11 | ||
| - tk=8.6.10 | ||
| - tktable=2.10 | ||
| - tornado=6.1 | ||
| - typing_extensions=3.10.0.0 | ||
| - tzdata=2021a | ||
| - wheel=0.36.2 | ||
| - xopen=1.1.0 | ||
| - xz=5.2.5 | ||
| - yaml=0.2.5 | ||
| - zip=3.0 | ||
| - zlib=1.2.11 | ||
| - zstd=1.5.0 | ||
| - pip: | ||
| - asgiref==3.3.4 | ||
| - biopython==1.79 | ||
| - decorator==4.4.2 | ||
| - django==3.2.4 | ||
| - illumina-utils==2.11 | ||
| - networkx==2.5.1 | ||
| - oligotyping==3.1 | ||
| - pillow==8.2.0 | ||
| - python-levenshtein==0.12.2 | ||
| - sqlparse==0.4.1 | ||
| name: dada0 | ||
|
|