iCodon Docker Container

Docker container for the iCodon R package that customizes mRNA expression through synonymous codon substitutions.

Build

docker build -t ghcr.io/rasilab/icodon:3.1 .

Run

Interactive R session:

docker run -it --rm -v "$PWD:/data" ghcr.io/rasilab/icodon:3.1

Run R script:

docker run --rm -v "$PWD:/data" ghcr.io/rasilab/icodon:3.1 Rscript /data/your_script.R

Usage in R

library(iCodon)

Package Information

The iCodon package is optimized for vertebrate transcriptomes including mouse, human, frog, and fish. For more information, see the GitHub repository.