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18 changes: 18 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -188,3 +188,21 @@ metagraph query -i graph.primary.small.dbg \
```

Then, it will save the resulting file in the S3. When all chunks are processed, a dedicated script will merge the results in a single file and send you a notification.

### Instructions for offline usage

MetaGraph can be installed locally for offline use on a Linux or Mac system as follows:
```sh
conda install -c bioconda -c conda-forge metagraph
```

Search indexes can be downloaded from [s3://metagraph-data-public](s3://metagraph-data-public) as follows:
```sh
XYZTODO
```

Search queries can then be executing using the same commands as above.

## Additional instructions

For further documentation and usage instructions (including setup instructions using Docker and via source code compilation), please refer to our [Quick start](https://metagraph.ethz.ch/static/docs/quick_start.html) guide in the [MetaGraph documentation](https://metagraph.ethz.ch/static/docs/index.html). The source code is maintained on our [GitHub repository](https://github.com/ratschlab/metagraph).