Exploring the Repetitive Content in the Genome of Cannabis sativa

Required scripts and data for the entire analysis in Pisupati et. al. 2018

Description

scripts folder contains all the scripts used to generate the plots and analyse the data

Each genomes folder contains

1. Repeat contigs after filtering (minimum 500bp) from RE.
2. Pi values across windows for all the contigs after analysis
3. Final table summary for the genome with depth and estimated half life

History

• Uploaded the data to github on 17-01-2017

Citation

Pisupati, R., Vergara, D., & Kane, N. C. Diversity and evolution of the repetitive genomic content in Cannabis sativa. BMC Genomics 19, 156 (2018)