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@reconhub

R Epidemics Consortium

Consortium for epidemics analysis and outbreak response using R

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  1. incidence Public

    ☣:chart_with_upwards_trend::chart_with_downwards_trend:☣ Compute and visualise incidence

    R 57 13

  2. outbreaker2 Public

    Disease outbreak reconstruction from epidemiological and genetic data

    R 31 21

  3. learn Public

    RECON learn: a free, open platform for training material on epidemics analysis

    HTML 36 30

  4. epicontacts Public

    Handling, Visualisation and Analysis of Epidemiological Contacts

    R 15 19

  5. aweek Public

    Convert dates to arbitrary week definitions 📆

    R 17 4

  6. deployer Public

    Self-contained R environment on a thumb drive

    R 10 3

Repositories

Showing 10 of 70 repositories
  • epicontacts Public

    Handling, Visualisation and Analysis of Epidemiological Contacts

    R 15 19 11 3 Updated Jan 20, 2025
  • projections Public

    Projections of future incidence

    R 14 8 4 0 Updated Dec 6, 2024
  • recon_site_reboot Public

    RECON Site consolidation

    Lua 0 0 6 0 Updated Dec 4, 2024
  • outbreaker2 Public

    Disease outbreak reconstruction from epidemiological and genetic data

    R 31 21 7 1 Updated Sep 25, 2024
  • incidence Public

    ☣:chart_with_upwards_trend::chart_with_downwards_trend:☣ Compute and visualise incidence

    R 57 13 16 3 Updated Aug 7, 2024
  • reconhub.github.io Public

    Official website for RECON - The R Epidemics CONsortium

    R 30 MIT 65 3 2 Updated Aug 2, 2024
  • epiflows Public

    ☣:airplane: Risk assessment of travel-related disease spread

    R 18 12 3 4 Updated Sep 20, 2023
  • epitrix Public

    Small Helpers and Tricks for Epidemics Analysis

    R 11 5 4 1 Updated Sep 20, 2023
  • Vue 0 0 1 5 Updated Apr 21, 2023
  • linelist Public

    An R package to import, clean, and store case data

    R 25 5 14 (1 issue needs help) 3 Updated Dec 9, 2022