Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

update to tabix with easy validation for a few file formats #1890

Open
wants to merge 1 commit into
base: develop
Choose a base branch
from

Conversation

vasudeva8
Copy link
Contributor

Update to PR #1887 to make the behaviour controlled by an option.
The error exit code return is the default behaviour as in last PR.
A command line option, '-y/--easyparse' is added to have a relaxed parsing, to create output even with non-parsable data, skipping them, as earlier tabix did. Instead of an error log, a warning will be made in such cases.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant