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MAINT fix quiet mode#402

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BorisMuzellec merged 3 commits into
mainfrom
fix/quiet_mode
Aug 28, 2025
Merged

MAINT fix quiet mode#402
BorisMuzellec merged 3 commits into
mainfrom
fix/quiet_mode

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@BorisMuzellec

@BorisMuzellec BorisMuzellec commented Aug 11, 2025

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Fixes #287

What does your PR implement? Be specific.

This PR ensures that no non-warning statements are printed in quiet mode. Main changes:

  • The quiet attribute is passed to sub_dds in the cooks refitting step
  • VST methods are now silent when quiet=True

@BorisMuzellec BorisMuzellec merged commit 2ddf397 into main Aug 28, 2025
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@BorisMuzellec BorisMuzellec deleted the fix/quiet_mode branch August 28, 2025 15:15
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[BUG] DeseqDataSet.deseq2() still prints when quiet=True is set

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