Releases · sequana/lora

What's Changed

First version of lora pipeline by @ddesvillechabrol in #3
Add hifiasm & Split snakefile & Use sequana-wrappers by @ddesvillechabrol in #4
refacto lora like other pipelines & remove sequana dep by @ddesvillechabrol in #10
add merge data after ccs generation by @ddesvillechabrol in #16
Add flye assembler by @ddesvillechabrol in #18
fix pipeline using input_directory by @ddesvillechabrol in #19
Fixing #22, #21 and #20 by @cokelaer in #23
update canu options & add circlator force option by @ddesvillechabrol in #27
Improvement to the UI , small HTML change, multiqc modules added by @cokelaer in #31
Blast only contig subset by @ddesvillechabrol in #33
Create summary page by @ddesvillechabrol in #34
Use tailwind instead of bulma by @ddesvillechabrol in #35
scheme for integration of polishing step by @ddesvillechabrol in #41
Add polypolish by @cokelaer in #42
add medaka_consensus & use profile by @ddesvillechabrol in #43
Add polishing nanopore by @ddesvillechabrol in #44
add apptainers by @cokelaer in #45
add more containers and small refactoring by @cokelaer in #46
Use poetry by @ddesvillechabrol in #50
set input for nanopore to fastq, fix min-rq type by @cokelaer in #52
get version from apptainer & update rulegraph by @ddesvillechabrol in #54
add checkm software by @cokelaer in #58
Fixing CI workflow by @cokelaer in #59
Add multiqc,unicycler, update to use click by @cokelaer in #60
add precommit, update flye container, small fixes by @cokelaer in #65
Major update by @cokelaer in #67

Full Changelog: https://github.com/sequana/lora/commits/v1.0.0