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seung-lab

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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 424 46

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 256 39

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 169 28

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 157 50

  5. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 107 30

  6. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 32

Repositories

Showing 10 of 185 repositories
  • seuron Public Forked from wongwill86/air-tasks

    SEUnglab neuRON pipeline

    seung-lab/seuron’s past year of commit activity
    Python 7 MIT 6 1 0 Updated Sep 7, 2025
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    seung-lab/neuroglancer’s past year of commit activity
    TypeScript 24 Apache-2.0 338 91 37 Updated Sep 5, 2025
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    seung-lab/igneous’s past year of commit activity
    Python 53 GPL-3.0 23 26 3 Updated Sep 3, 2025
  • fastmorph Public

    Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.

    seung-lab/fastmorph’s past year of commit activity
    C++ 19 LGPL-3.0 3 3 0 Updated Sep 3, 2025
  • fill_voids Public

    Fill holes in binary 2D & 3D images fast.

    seung-lab/fill_voids’s past year of commit activity
    C++ 26 LGPL-3.0 4 2 0 Updated Sep 3, 2025
  • crackle Public

    3D dense segmentation compression codec based on crack codes.

    seung-lab/crackle’s past year of commit activity
    C++ 9 BSD-3-Clause 1 10 1 Updated Sep 3, 2025
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    seung-lab/cloud-volume’s past year of commit activity
    Python 157 BSD-3-Clause 50 83 5 Updated Sep 1, 2025
  • connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    seung-lab/connected-components-3d’s past year of commit activity
    C++ 424 LGPL-3.0 46 14 5 Updated Sep 1, 2025
  • fastremap Public

    Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

    seung-lab/fastremap’s past year of commit activity
    C++ 63 LGPL-3.0 8 1 0 Updated Sep 1, 2025
  • cross-section Public

    Tools for computing properties of cross sections of 3D voxelized images.

    seung-lab/cross-section’s past year of commit activity
    C++ 5 LGPL-3.0 2 2 3 Updated Sep 1, 2025