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Error: Missing input files for rule all

Status: Open.

#243 In smith-chem-wisc/Spritz;

· SamueldelaCamaraFuentes opened on Apr 4, 2025

Error in rule setup_transfer_mods

Bug

Question

Status: Open.

#240 In smith-chem-wisc/Spritz;

· trom2 opened on Apr 3, 2024

Enable running Spritz with singularity

Compatibility

New Feature

Status: Open.

#239 In smith-chem-wisc/Spritz;

· acesnik opened on Sep 13, 2023

Error in rule make_gene_quant_dataframe_ref

Question

Status: Open.

#237 In smith-chem-wisc/Spritz;

· animesh opened on Sep 1, 2023

Update uniprot URLs to rest.uniprot from legacy.uniprot

Maintenance

Status: Open.

#226 In smith-chem-wisc/Spritz;

· acesnik opened on Sep 6, 2022

Using Arabidopsis sequences for tests instead of yeast

Maintenance

Status: Open.

#224 In smith-chem-wisc/Spritz;

· acesnik opened on Feb 19, 2022

FragPipe-ready fasta headers and redundancy reduction

Compatibility

Status: Open.

#221 In smith-chem-wisc/Spritz;

· MiguelCos opened on Aug 24, 2021

Slight discrepancy in number of targets and decoys in withdecoys.fasta after mzLib decoy generation

Improve Feature

Status: Open.

#220 In smith-chem-wisc/Spritz;

· acesnik opened on Aug 17, 2021

Option to generate separate databases for each input

New Feature

Status: Open.

#216 In smith-chem-wisc/Spritz;

· acesnik opened on Jul 30, 2021

Docker vs Nextflow

Question

Status: Open.

#202 In smith-chem-wisc/Spritz;

· DrDee79 opened on Feb 1, 2021

Allow RefSeq references to be used

New Feature

Status: Open.

#194 In smith-chem-wisc/Spritz;

· acesnik opened on Oct 9, 2020

Implement reference-free proteome generation

New Feature

Status: Open.

#193 In smith-chem-wisc/Spritz;

· acesnik opened on Oct 9, 2020