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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.5k 592

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 222 191

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 165 30

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    58 14

  5. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 32 10

  6. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 31 24

Repositories

Showing 10 of 61 repositories
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 222 191 22 29 Updated Apr 24, 2025
  • snakemake-plugin-catalog Public

    An automatically updated catalog of Snakemake plugins and their documentation

    Python 2 MIT 3 1 2 Updated Apr 24, 2025
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2,455 MIT 592 1,101 (1 issue needs help) 89 Updated Apr 24, 2025
  • snakemake-lang-vscode-plugin Public

    Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.

    Python 16 MIT 16 10 3 Updated Apr 23, 2025
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 32 MIT 10 3 1 Updated Apr 21, 2025
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 31 MIT 24 33 6 Updated Apr 11, 2025
  • snakemake-executor-plugin-kubernetes Public

    A snakemake executor plugin for submission of jobs to Kubernetes

    Python 3 MIT 9 3 6 Updated Apr 11, 2025
  • snakemake-image-kubeflow Public

    A Snakemake image for kubeflow

    Python 1 0 0 1 Updated Apr 11, 2025
  • mastodon-release-post-action Public

    GitHub action to facilitate posting release notes on Mastodon

    Python 0 MIT 0 0 0 Updated Apr 10, 2025
  • snakemake-executor-plugin-googlebatch Public

    Snakemake executor plugin for Google Batch

    Python 4 MIT 6 10 3 Updated Apr 8, 2025
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